H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000013075 Accession number: AK056461 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Hypothetical protein.
 
 

Transcript original information
Accession number AK056461.1
CAGE tag ID NA
EST ID NA
Clone Number NT2RP7004173
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 2757[bp] (No. of exon:1)[A:668 T:833 G:662 C:594]
Devision HUM
Molecular type mRNA
Library origin Cell type teratocarcinoma
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0214561
Genomic location  G-integra Help Chromosome 2
Location 2q21.3
Position 135209435- 135212191
Strand +
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:4249
KEGG GENES KEGG GENES(4249)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000438751
Predicted CDS 2111..2419;  102[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.712

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000013075
H-Inv cluster ID Locus viewHIX0214561
Accession number AK056461.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000438751
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:4249
KEGG GENES KEGG GENES(4249)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
FR ID FR224140
Accession
Description
Location
PMID


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  cytosol;  nuclear;  Other; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 212098_at; 
HG-U133A 212098_at; 
HG-U133A_2 212098_at; 
HG-U133B NA
HG-U133_Plus_2 212098_at; 
HG-U95 34866_at;  72015_at; 
HG-U95A 34866_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E 72015_at; 
HG-U95Av2 NA
HuEx-1_0 2507055;  2507056;  2507057;  2507058;  2577489;  2577490;  2577491; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
10 .. 10 A/C rs183918770 + 5'UTR
69 .. 69 T/A rs149255956 + 5'UTR
73 .. 73 A/C rs187679810 + 5'UTR
140 ^ 141 -/C rs34731290 + 5'UTR
157 .. 157 T/C rs669740 - 5'UTR
183 .. 183 C/T rs113670398 + 5'UTR
291 .. 291 C/T rs191466259 + 5'UTR
293 .. 293 G/A rs2290481 + 5'UTR
306 .. 306 G/A/T rs182170088 + 5'UTR
378 .. 378 T/G rs144474967 + 5'UTR
385 .. 385 C/T rs187044012 + 5'UTR
520 .. 520 T/G rs137947517 + 5'UTR
540 .. 540 C/T rs75805028 + 5'UTR
586 .. 586 G/T rs142524975 + 5'UTR
661 .. 661 T/C rs79594066 + 5'UTR
672 .. 672 A/G rs191482755 + 5'UTR
701 .. 701 G/A rs2290482 + 5'UTR
903 .. 903 A/G rs185250306 + 5'UTR
956 .. 956 A/G rs2290483 + 5'UTR
1032 .. 1032 G/A rs80233518 + 5'UTR
1127 .. 1127 C/A rs77355111 + 5'UTR
1128 .. 1128 T/C rs190095207 + 5'UTR
1277 .. 1277 G/A rs145994965 + 5'UTR
1332 .. 1332 A/G rs192867568 + 5'UTR
1347 .. 1347 G/A rs185809443 + 5'UTR
1448 .. 1448 C/T rs139933732 + 5'UTR
1589 .. 1589 T/C rs74398272 + 5'UTR
1607 .. 1607 T/C rs142217514 + 5'UTR
1650 .. 1650 T/C rs150808077 + 5'UTR
1754 .. 1754 G/- rs34570178 + 5'UTR
1786 .. 1786 A/G rs73960911 + 5'UTR
1844 .. 1844 C/T rs139231308 + 5'UTR
1984 .. 1984 T/G rs149984807 + 5'UTR
1994 .. 1994 G/T rs189466732 + 5'UTR
2037 .. 2037 T/G rs181049761 + 5'UTR
2076 .. 2076 A/G rs79775263 + 5'UTR
2110 .. 2110 A/T rs1041938 + 5'UTR
2115 .. 2115 G/C rs34497810 + CDS Nonsynonymous[Arg2Pro]
2233 .. 2233 A/G rs78024851 + CDS Synonymous[Thr41Thr]
2294 .. 2294 G/T rs185159508 + CDS Nonsynonymous[Ala62Ser]
2427 .. 2427 C/T rs7841 + 3'UTR
2512 .. 2512 C/A rs147686678 + 3'UTR
2539 .. 2539 C/T rs142454060 + 3'UTR
2592 .. 2592 C/G rs144758484 + 3'UTR
2648 .. 2648 G/A rs188693246 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MIR 1167 1241 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer