H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000006919 Accession number: AK023645 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Hypothetical protein.
 
 

Transcript original information
Accession number AK023645.1
CAGE tag ID NA
EST ID NA
Clone Number PLACE1009050
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 1822[bp] (No. of exon:1)[A:631 T:544 G:311 C:336]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type placenta
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0002472
Genomic location  G-integra Help Chromosome 2
Location 2q21.3
Position 135715089- 135716915
Strand -
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:905
KEGG GENES KEGG GENES(905)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000064657
Predicted CDS 590..904;  104[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.659

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000006919
H-Inv cluster ID Locus viewHIX0002472
Accession number AK023645.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000064657
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:905
KEGG GENES KEGG GENES(905)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  cytosol;  nuclear;  Other; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 229184_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 229184_at; 
HG-U133_Plus_2 229184_at; 
HG-U95 55908_at;  90388_at; 
HG-U95A NA
HG-U95B 55908_at; 
HG-U95C NA
HG-U95D 90388_at; 
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2507267;  2507268;  2507270;  2507272; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_24_P165816; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
24 .. 24 T/C rs181199141 - 5'UTR
256 .. 256 G/A rs115392960 - 5'UTR
318 .. 318 A/G rs13389642 - 5'UTR
570 .. 570 G/A rs111705714 - 5'UTR
593 .. 593 A/G rs144666815 - CDS Nonsynonymous[Ile2Val]
656 .. 656 T/A rs45490697 - CDS Nonsynonymous[Cys23Ser]
661 .. 661 C/T rs116241689 - CDS Synonymous[Ser24Ser]
693 .. 693 C/T rs190398711 - CDS Nonsynonymous[Ser35Leu]
703 .. 703 G/C rs45453394 - CDS Nonsynonymous[Met38Ile]
838 .. 838 T/A rs185296854 - CDS AA-STOP[Tyr83*]
848 .. 848 T/C rs180865919 - CDS Nonsynonymous[Ser87Pro]
946 .. 946 G/A rs190472437 - 3'UTR
959 .. 959 C/T rs1947112 + 3'UTR
967 .. 967 C/A rs200891150 - 3'UTR
1127 .. 1127 T/C rs185613485 - 3'UTR
1139 .. 1139 G/T rs181699676 - 3'UTR
1170 .. 1170 A/T rs140664834 - 3'UTR
1212 .. 1212 G/T rs45528139 - 3'UTR
1289 .. 1289 T/A rs144154293 - 3'UTR
1370 .. 1370 T/C rs188858589 - 3'UTR
1384 .. 1384 T/C rs16831181 - 3'UTR
1448 .. 1448 T/A rs200482849 - 3'UTR
1541 .. 1541 G/A rs114242025 - 3'UTR
1647 .. 1647 G/T rs184461066 - 3'UTR
1657 .. 1657 A/G rs191651086 - 3'UTR
1693 .. 1693 C/T rs17258232 - 3'UTR
1742 .. 1742 A/C rs10167500 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MamRep605 676 718 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer