H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
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InterPro name*
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OMIM title*
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H-Invitational ID:
HIT000006919
Accession number:
AK023645
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Hypothetical protein.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AK023645.1
CAGE tag ID
NA
EST ID
NA
Clone Number
PLACE1009050
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
Project:FLJ; Provider:FLJ/HRI;
Annotation project
H-Invitational FLcDNA
Length of cDNA
1822[bp] (No. of exon:1)[A:631 T:544 G:311 C:336]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
placenta
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
GGATTTATGTTGTCAATAAACATTTTATTAGTTCCTTGTATGGATAAGAA GCTTAAAGTCAATGACTAATTCATGCCATATACACATATTCCTGTTTTAG ATTTTCTATTAGCAAACATCTTGTTCAATTGTTGTTGGGAGTTTTGAGTA CATTCAGAAAATGAAACCCCACAATCACTGTTTACAACAAATGAGTATGT ATTTTTCCTAATAAAATGAAGCTGCTTGAAAAAAACATACCTTAAAATTA AGAATGTACTCATCACTTAATAAGAATGTACTCATTATTAAACAATAGGC AAATCAAACAAACTACTAAAGTGGCAATGCTCGGGATTTTGAGTTTCCGC CCCAAACTTGAAAATAAAGTAGACAGCCCTCAAACTTTGAGATAAATGGA TTCCACAGTGAAGTTAAGTTGCCTATACGAGAACAGAATTACTCCTAGCC ATTCAATCTTCGATGGATCTTATCAACCTACTTAATCAATCTGTCAGGCA GAATAGGTAACAGTAAATTATAAAGAAGGTGCCACAGAGGTAAAAACTGG CTGTGCCCAAATTGACACTGCAGAGCAGAAAATTAATGTATGATATTAGG TCTAAAACATTTTGAGCTTTTCAGTCCCACTGGCAAAATGTATTACAAAA ATAGATGCTCCAGGGAAACTAACAAAAGCAACCTTTTGATTTCGGCTTCC ATGTATGTCAGCTTACAGCAATTAGGTTGCTCACTGATTTCTGATATTAA CGTATCAGAATGTGATTCTCAAATTAGTATCATAGCTTGGTACCCAAGGT CAGAGAATGTGCTGCTTTTCCAATGCAAAAATCCCTATCTAAATAAGTCC ATCTTAGGGCACATGAGATTAGCACCTATTGTCCTGTCAACTCATTTAGT TTAAGTGTGAGATTTGTTGATCCCTCATCTGGGTAAAGGTAGTCAGTGAA TCCTACTGCCTCCCTTCAAGACAGCCTCTGAGGCAGTAATCAGGTTAGAA ATACTGAATCCATGATTCTTCCTAACAAGAGCCTCCAAATATTCTCAGCA AAGACATCCTAAATTTAAGCAGATATGCTTTTCATTTGGATAAAATTGGA AATGGTGTAATACCTTGAGAGAATGGTTTTCCTAAGACGTTACCATGTTA AAAAAGTCCCCATGTCTATAGAAAATGCAAAACCCTGAAATATCTAATCA ACTAACTGTACGCATGAAATGCATAATATTCATGCAGATATAAGCAGTGG TTTATTTCTAAGGTTGCTTAACGAATACAAGTCAGCAATTTAAGTTCTCA AATAGAAAAGAAAATGTGCTTGAAACCTTTTAAGGCAATGGTATTTTGTA CTAACAAAAACATTTCATATTGGTTCTCTGAAATAGCCCTCAAGTAGTCA TTTCTAGTTCAAAGAGGATAGGCCAAAAAAATTAGGTATTCTATTATTAA TACAATCTGTTGCTACAAAGCAATATACGCAGCCACTCATGACATTCAAG AAACCATACATCATGTTAGAAATTTCTTTTAGATGACTCTGAATAAGAAC TTTAACCAGAAGGAATCTGAACACACGGAGGAAGACCAAGGTGCACATTT AACTGCTTTCAAAGATAAACCTAGGGCTGACAACAGGACTTTTTTGGTAT TTACATACCTGCAATTAGGAAACTGTGAGGTTTTACCACTACCGGATACT GCCGCCCGTTAAGTAGGCCTCTAAGAATGTTTCAGTAACAAACCACCCTT TGCTTTGGTTCTGAAGATACCTATTTTGAAATAGCTAAGGCAAATATTCA GAGGGACACAGCTCAATATTGG
Gene structure information
H-Inv cluster ID
HIX0002472
Genomic location
Chromosome
2
Location
2q21.3
Position
135715089- 135716915
Strand
-
Possible duplicated location(s)
NA
Gene structure
1 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:905
;
KEGG GENES
KEGG GENES(905)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000064657
Predicted CDS
590..904; 104[aa]; Orientation:+2;
Codon Adaptation Index (CAI).
0.659
MILGLKHFELFSPTGKMYYKNRCSRETNKSNLLISASMYVSLQQLGCSLI SDINVSECDSQISIIAWYPRSENVLLFQCKNPYLNKSILGHMRLAPIVLS THLV*
Gene function information
H-Inv ID
HIT000006919
H-Inv cluster ID
HIX0002472
Accession number
AK023645.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
Representative transcript;
Coding potential
Protein coding;
Definition
Hypothetical protein.
Similarity category
Category: Hypothetical protein(Category V).
Hypothetical protein.
Experimental evidence
NA
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000064657
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:905
;
KEGG GENES
KEGG GENES(905)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Human curated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool
;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
extracellular; cytosol; nuclear; Other;
Target P
Not predicted
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
NA
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
229184_at;
HG-U133A
NA
HG-U133A_2
NA
HG-U133B
229184_at;
HG-U133_Plus_2
229184_at;
HG-U95
55908_at; 90388_at;
HG-U95A
NA
HG-U95B
55908_at;
HG-U95C
NA
HG-U95D
90388_at;
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2507267; 2507268; 2507270; 2507272;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
A_24_P165816;
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
24 .. 24
T/C
rs181199141
-
5'UTR
256 .. 256
G/A
rs115392960
-
5'UTR
318 .. 318
A/G
rs13389642
-
5'UTR
570 .. 570
G/A
rs111705714
-
5'UTR
593 .. 593
A/G
rs144666815
-
CDS
Nonsynonymous[Ile2Val]
656 .. 656
T/A
rs45490697
-
CDS
Nonsynonymous[Cys23Ser]
661 .. 661
C/T
rs116241689
-
CDS
Synonymous[Ser24Ser]
693 .. 693
C/T
rs190398711
-
CDS
Nonsynonymous[Ser35Leu]
703 .. 703
G/C
rs45453394
-
CDS
Nonsynonymous[Met38Ile]
838 .. 838
T/A
rs185296854
-
CDS
AA-STOP[Tyr83*]
848 .. 848
T/C
rs180865919
-
CDS
Nonsynonymous[Ser87Pro]
946 .. 946
G/A
rs190472437
-
3'UTR
959 .. 959
C/T
rs1947112
+
3'UTR
967 .. 967
C/A
rs200891150
-
3'UTR
1127 .. 1127
T/C
rs185613485
-
3'UTR
1139 .. 1139
G/T
rs181699676
-
3'UTR
1170 .. 1170
A/T
rs140664834
-
3'UTR
1212 .. 1212
G/T
rs45528139
-
3'UTR
1289 .. 1289
T/A
rs144154293
-
3'UTR
1370 .. 1370
T/C
rs188858589
-
3'UTR
1384 .. 1384
T/C
rs16831181
-
3'UTR
1448 .. 1448
T/A
rs200482849
-
3'UTR
1541 .. 1541
G/A
rs114242025
-
3'UTR
1647 .. 1647
G/T
rs184461066
-
3'UTR
1657 .. 1657
A/G
rs191651086
-
3'UTR
1693 .. 1693
C/T
rs17258232
-
3'UTR
1742 .. 1742
A/C
rs10167500
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
MamRep605
676
718
+
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;