H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
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Definition*
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---
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H-Invitational ID:
HIT000006765
Accession number:
AK023491
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to Zinc transporter 2 isoform 2.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AK023491.1
CAGE tag ID
NA
EST ID
NA
Clone Number
PLACE1002500
Experimental resources
NBRC
;
HGPD
;
Antibody (SLC30A2)
;
Catalog (SLC30A2)
;
Sequence data provider
Project:FLJ; Provider:FLJ/HRI;
Annotation project
H-Invitational FLcDNA
Length of cDNA
2291[bp] (No. of exon:3)[A:474 T:507 G:647 C:663]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
placenta
Develpmental stage
NA
Sequence quality information
CDS feature
N-truncated
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
Truncation;
Notes
NA
AATACAAGTATGTAGACCCCATCTGCACCTTCGTCTTCTCCATCCTGGTC CTGGGGACAACCTTGACCATCCTGAGAGATGTGATCCTGGTGTTGATGGA AGGGACCCCCAAGGGCGTTGACTTCACAGCTGTTCGTGATCTGCTGCTGT CGGTGGAGGGGGTAGAAGCCCTGCACAGCCTGCATATCTGGGCACTGACG GTGGCCCAGCCTGTTCTGTCTGTCCACATCGCCATTGCTCAGAATACAGA CGCCCAGGCTGTGCTGAAGACAGCCAGCAGCCGCCTCCAAGGGAAGTTCC ACTTCCACACCGTGACCATCCAGATCGAGGACTACTCGGAGGACATGAAG GACTGTCAGGCATGCCAGGGCCCCTCAGACTGACTGCTCAGCCAGGCACC AACTGGGGCATGAACAGGACCTGCAGGTGGCTGGACTGAGTGTCCCCCAG GCCCAGCCAGGACTTTGCCTACCCCAGCTGTGTTATAAACCAGGTCCCCC TCCTGACCTCTGCCCCACTCCAGGAATGGAGCTCTTCCCAGCCTCCCATC TGACTACAGCCAGGGTGGGGACTCAGCGGGTATAAAGCTAGTGTGACCCT GCTCTTCCAGCTCCTGGGCCAGCTCTGGAAGGGCTGTATTTGGGCCTAAT CCTCAGCAACTGTTCTACCACTCGCAGGGGCAAAGGTGGTGAGCCACGGG ACGTCCAAGGGGAGGCTGGCCCCAGCGCGCCCATACTGCCTGCCTCATGC CCCATTCTCAGCCTGGCTGGCCTTTGCCTTTATGAATCTGAGCCCCTCCA TCTGCCTATAGCAATAGGCACGGGGGTGAGGACCCTCACACTCTCATTTG AGCCTCCCTGAGGCAGGGAGCCAGGAGGCACCTGAGGCCTATCTGTGCCT TAGTCACTTCAGCTATGAGCCAAATGTTCCCTTTCCTGGAGGGGAGAGGC TTCTTACTAGGTAAGAGACAGGTTTCCTCTTTCCTTATTTCCTCAGCTGT GCCAACACAAAAAACAACTTTGGCACAGGTGGTGGGCAGGGGGTAGAGAG ATTTCAGCTTGGGTTCTGCACTAACAGCCTCCAAGCCCCCTGGCACTTCT GTTGCCCTGAGAGTGTCCCAGGGGATTCAGAGTCTCCAGAAAGATATGGC TGGGCCAACTCTGTTGCCTACCTGGCCTGACCCAGTCGGAGCCTGACATG GTGGAGGGAAAGGGAGACAAGTGGGGCTGCACTCGGTCCAGAGGCCAGCT AGGAGGGAAACCGCAGCTTCCTGGGGCTTGTGTGTGAAGATTCCTGACTT AGGGGTGGCTTTTGTTTACAAGATGCAAGAGGGGAAACCTGTCCCCGACT CATCGAGACAACATGCCCAGTTATCAGGGAGTCCTGTGTCACAAGGTCTG TCTCTGCCATTGTAAGCAAGTGCCTTGGGCGAGCTGGCCTCTGCCCCACA GTCTCATCTGTACACCGACAGGGTTGATGCCTCCCTCACAGGGTTGAGAA CAAGAGCCAGTTGGCCAAGTACCTGTGGTTGTTGAAGATTGGTTACTTTT ACCATCCTGGGGACAGGGAACTCTGTGGCCCGAGGCTGCCTCACTGAGGA GTCAGGTGGGCTTCCCAGCCTCCCCAGGGGCAGTGCTGAGTTTGTCTTGA CTGTTCTGGCCCGAGGTGGGAGGAGGTGGGTTTGGTCACTTGCCTCCCAC TTTAAATCTCTGTCTTTCCATCTGTGAAATGACCTCTTTGTGCCTTCCCA GCACTGTCATCCTGATCGCCTGTGTTCTAGGTAGATGGGTCCTTCAGCCC CTCCAGGTCTGTGAAAAGTCTGTGGAAAGCACTGGCCTGGAGAGGGGTGG GGGGTTGCTGGTGGGTGCTCCATTCCACCACAATCTCAGGGGACTCAACC TCCCCTACCCAACTCCCCACCCCCACCCAAGCCATGGCAGGCCCCAGGAA CTTGATCCTGGGCTTTGCCGTATGCCAAGTCCTTACACCCCTCTCAAGAG ACAGTCATTGGCTGGGCACGGTGGCTCATGCCTGCAATCCCAGCACCTTG GGAGGCTGAGGCAGGCAGATGACTTGAGGCCAGGAGTTCGAGACCAGCCT GGCCAATATGGCGAAACCTCATTTCTACTAAAAATACAAAAACTAGCCAG GCGTGGTGGCTTGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGG AGAATCGCTTGAACCGGGGAGGCAGAGGTTGCAGTGAGCTGAGATCACAC CACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCAGCTT
Gene structure information
H-Inv cluster ID
HIX0000283
Genomic location
Chromosome
1
Location
1p36.11
Position
26363743- 26368292
Strand
-
Possible duplicated location(s)
NA
Gene structure
3 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:7780
;
KEGG GENES
KEGG GENES(7780)
;
GeneCard
SLC30A2
;
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000134174
Predicted CDS
3..383; 126[aa]; Orientation:+3;
Codon Adaptation Index (CAI).
0.823
YKYVDPICTFVFSILVLGTTLTILRDVILVLMEGTPKGVDFTAVRDLLLS VEGVEALHSLHIWALTVAQPVLSVHIAIAQNTDAQAVLKTASSRLQGKFH FHTVTIQIEDYSEDMKDCQACQGPSD*
Motif information
a.a.
length
InterPro
Name
112
IPR002524
Cation efflux protein [Family]
126
IPR002524
Cation efflux protein [Family]
31
IPR027469
Cation efflux protein transmembrane domain [Domain]
112
IPR002524
Cation efflux protein [Family]
Gene function information
H-Inv ID
HIT000006765
H-Inv cluster ID
HIX0000283
Accession number
AK023491.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Similar to Zinc transporter 2 isoform 2.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_115902
) [Identity/coverage = 100.0%/39.01%] to Homo sapiens protein.
Experimental evidence
Protein evidence
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
SLC30A2
HGNC aliases
NA
HGNC name
solute carrier family 30 (zinc transporter), member 2
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000134174
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:7780
;
KEGG GENES
KEGG GENES(7780)
;
GeneCard
SLC30A2
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Gene ontology information
Molecular function
cation transporter activity (
GO:0008324
);
Biological process
cation transport (
GO:0006812
);
Cellular component
integral to membrane (
GO:0016021
);
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
extracellular; peroxisome;
Target P
signal peptide
SOSUI
membrane protein
TMHMM
membrane protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
AGhsB110220; AGhsB171023;
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
224485_s_at; 230084_at;
HG-U133A
NA
HG-U133A_2
NA
HG-U133B
224485_s_at; 230084_at;
HG-U133_Plus_2
224485_s_at; 230084_at;
HG-U95
90456_at;
HG-U95A
NA
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
90456_at;
HG-U95Av2
NA
HuEx-1_0
2402518; 2402519; 2402520; 2402521; 2402522; 2402523;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
A_23_P319083;
Whole Human Genome Oligo Microarray:PGID247
A_23_P319083; A_24_P156748;
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
32 .. 32
C/T
rs1316852
-
CDS
Synonymous[Phe10Phe]
44 .. 44
C/A
rs202003978
-
CDS
Synonymous[Ile14Ile]
63 .. 63
T/C
rs138246170
-
CDS
Synonymous[Leu21Leu]
104 .. 104
G/A
rs200846211
-
CDS
Synonymous[Gly34Gly]
136 .. 136
G/A
rs149340896
-
CDS
Nonsynonymous[Arg45His]
152 .. 152
G/A
rs150251854
-
CDS
Synonymous[Ser50Ser]
159 .. 159
G/A
rs151175941
-
CDS
Nonsynonymous[Gly53Arg]
185 .. 185
T/C
rs35925054
+
CDS
Synonymous[His61His]
230 .. 230
C/T
rs35020821
+
CDS
Synonymous[Ile76Ile]
252 .. 252
G/A
rs149723161
-
CDS
Nonsynonymous[Ala84Thr]
282 .. 282
C/T
rs35623192
+
CDS
Nonsynonymous[Arg94Cys]
283 .. 283
G/A
rs145406127
-
CDS
Nonsynonymous[Arg94His]
312 .. 312
G/A
rs144832711
-
CDS
Nonsynonymous[Val104Met]
326 .. 326
C/T
rs147469106
-
CDS
Synonymous[Ile108Ile]
374 .. 374
C/-
rs35611719
-
CDS
386 .. 386
G/T
rs199779903
-
3'UTR
420 .. 420
C/A
rs76835970
-
3'UTR
473 .. 473
C/G
rs77114771
-
3'UTR
485 .. 485
A/G
rs2997452
+
3'UTR
578 .. 578
G/A
rs183154780
-
3'UTR
601 .. 601
G/A
rs116656369
-
3'UTR
660 .. 660
C/A
rs4659404
-
3'UTR
728 .. 728
C/T
rs3008215
-
3'UTR
1183 .. 1183
C/G
rs117825055
-
3'UTR
1264 .. 1264
C/A
rs142657510
-
3'UTR
1344 .. 1344
C/T
rs41284323
-
3'UTR
1355 .. 1355
G/A
rs138067536
-
3'UTR
1392 .. 1392
C/T
rs145431016
-
3'UTR
1467 ^ 1468
-/T
rs34521566
-
3'UTR
1504 .. 1504
G/C
rs114869184
-
3'UTR
1550 ^ 1551
-/T
rs202244873
-
3'UTR
1663 .. 1663
G/A
rs11587475
-
3'UTR
1747 .. 1747
C/G
rs148211421
-
3'UTR
1785 .. 1785
A/G
rs11247849
-
3'UTR
1932 .. 1932
C/T
rs190211071
-
3'UTR
1948 .. 1948
G/C
rs186162626
-
3'UTR
2056 .. 2056
C/T
rs181403143
-
3'UTR
2125 .. 2125
C/T
rs57897002
-
3'UTR
2216 .. 2216
G/A
rs190641399
-
3'UTR
2270 .. 2270
C/T
rs3008214
-
3'UTR
2279 .. 2279
A/G
rs2997453
+
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
MIRb
1374
1496
+
AluSz
2010
2286
+
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;