H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000006765 Accession number: AK023491 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Zinc transporter 2 isoform 2.
 
 

Transcript original information
Accession number AK023491.1
CAGE tag ID NA
EST ID NA
Clone Number PLACE1002500
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (SLC30A2) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (SLC30A2);
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 2291[bp] (No. of exon:3)[A:474 T:507 G:647 C:663]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type placenta
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature Truncation; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0000283
Genomic location  G-integra Help Chromosome 1
Location 1p36.11
Position 26363743- 26368292
Strand -
Possible duplicated location(s) NA
Gene structure 3 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:7780
KEGG GENES KEGG GENES(7780)
GeneCard GeneCardSLC30A2*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000134174
Predicted CDS 3..383;  126[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.823

Motif information
ORF

length(126),orf(3:383)
YKYVDPICTFVFSILVLGTTLTILRDVILVLMEGTPKGVDFTAVRDLLLS
VEGVEALHSLHIWALTVAQPVLSVHIAIAQNTDAQAVLKTASSRLQGKFH
FHTVTIQIEDYSEDMKDCQACQGPSD*
a.a.
length
InterPro Name
length(112), motif(1:112) 112 IPR002524 Cation efflux protein [Family]
length(126), motif(1:126) 126 IPR002524 Cation efflux protein [Family]
length(31), motif(2:32) 31 IPR027469 Cation efflux protein transmembrane domain [Domain]
length(112), motif(3:114) 112 IPR002524 Cation efflux protein [Family]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000006765
H-Inv cluster ID Locus viewHIX0000283
Accession number AK023491.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Zinc transporter 2 isoform 2.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_115902)  [Identity/coverage = 100.0%/39.01%] to Homo sapiens protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol SLC30A2
HGNC aliases NA
HGNC name solute carrier family 30 (zinc transporter), member 2
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000134174
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:7780
KEGG GENES KEGG GENES(7780)
GeneCard GeneCardSLC30A2*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA

Gene ontology information
Molecular function cation transporter activity (GO:0008324); 
Biological process cation transport (GO:0006812); 
Cellular component integral to membrane (GO:0016021); 

Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  peroxisome; 
Target P signal peptide
SOSUI membrane protein
TMHMM membrane protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsB110220;  AGhsB171023; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 224485_s_at;  230084_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 224485_s_at;  230084_at; 
HG-U133_Plus_2 224485_s_at;  230084_at; 
HG-U95 90456_at; 
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E 90456_at; 
HG-U95Av2 NA
HuEx-1_0 2402518;  2402519;  2402520;  2402521;  2402522;  2402523; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P319083; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P319083;  A_24_P156748; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
32 .. 32 C/T rs1316852 - CDS Synonymous[Phe10Phe]
44 .. 44 C/A rs202003978 - CDS Synonymous[Ile14Ile]
63 .. 63 T/C rs138246170 - CDS Synonymous[Leu21Leu]
104 .. 104 G/A rs200846211 - CDS Synonymous[Gly34Gly]
136 .. 136 G/A rs149340896 - CDS Nonsynonymous[Arg45His]
152 .. 152 G/A rs150251854 - CDS Synonymous[Ser50Ser]
159 .. 159 G/A rs151175941 - CDS Nonsynonymous[Gly53Arg]
185 .. 185 T/C rs35925054 + CDS Synonymous[His61His]
230 .. 230 C/T rs35020821 + CDS Synonymous[Ile76Ile]
252 .. 252 G/A rs149723161 - CDS Nonsynonymous[Ala84Thr]
282 .. 282 C/T rs35623192 + CDS Nonsynonymous[Arg94Cys]
283 .. 283 G/A rs145406127 - CDS Nonsynonymous[Arg94His]
312 .. 312 G/A rs144832711 - CDS Nonsynonymous[Val104Met]
326 .. 326 C/T rs147469106 - CDS Synonymous[Ile108Ile]
374 .. 374 C/- rs35611719 - CDS
386 .. 386 G/T rs199779903 - 3'UTR
420 .. 420 C/A rs76835970 - 3'UTR
473 .. 473 C/G rs77114771 - 3'UTR
485 .. 485 A/G rs2997452 + 3'UTR
578 .. 578 G/A rs183154780 - 3'UTR
601 .. 601 G/A rs116656369 - 3'UTR
660 .. 660 C/A rs4659404 - 3'UTR
728 .. 728 C/T rs3008215 - 3'UTR
1183 .. 1183 C/G rs117825055 - 3'UTR
1264 .. 1264 C/A rs142657510 - 3'UTR
1344 .. 1344 C/T rs41284323 - 3'UTR
1355 .. 1355 G/A rs138067536 - 3'UTR
1392 .. 1392 C/T rs145431016 - 3'UTR
1467 ^ 1468 -/T rs34521566 - 3'UTR
1504 .. 1504 G/C rs114869184 - 3'UTR
1550 ^ 1551 -/T rs202244873 - 3'UTR
1663 .. 1663 G/A rs11587475 - 3'UTR
1747 .. 1747 C/G rs148211421 - 3'UTR
1785 .. 1785 A/G rs11247849 - 3'UTR
1932 .. 1932 C/T rs190211071 - 3'UTR
1948 .. 1948 G/C rs186162626 - 3'UTR
2056 .. 2056 C/T rs181403143 - 3'UTR
2125 .. 2125 C/T rs57897002 - 3'UTR
2216 .. 2216 G/A rs190641399 - 3'UTR
2270 .. 2270 C/T rs3008214 - 3'UTR
2279 .. 2279 A/G rs2997453 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MIRb 1374 1496 +
AluSz 2010 2286 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer