H-InvDB_8.3 released on March 26, 2013. Search by Keyword H-Inv ID (HIT) H-Inv cluster ID (HIX) H-Inv protein ID (HIP) H-Inv gene family/group (HIF) Accession number Chromosome number Chromosome band Definition* Data source ID --- CCDS ID dbSNP ID (rs number) EC number Ensembl ID EntrezGene ID FR ID FR Accession number GO ID GO name* HGNC gene symbol HGNC gene name* InterPro ID InterPro name* OMIM ID OMIM title* Pathway ID Pathway name* RefSeq (gene) ID RefSeq (protein) ID SCOP ID UniProt for Advanced Search

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Locus view Protein view G-integra DiseaseInfo Viewer H-ANGEL Evola PPI view Gene Family/Group Hyperlink MS

H-Invitational ID: HIT000005681 Accession number: AK022407 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Similar to Protein FAM116A;

		Select format Flat file XML file Nucleotide sequence fasta Protein sequence fasta

Transcript original information Accession number AK022407.1 CAGE tag ID NA EST ID NA Clone Number MAMMA1002294 Experimental resources   NBRC ; HGPD ; Sequence data provider Project:FLJ; Provider:FLJ/HRI;  Annotation project H-Invitational FLcDNA Length of cDNA 1661[bp] (No. of exon:1)[A:341 T:308 G:535 C:477] Devision HUM Molecular type mRNA Library origin Cell type NA Tissue type Mammary gland Develpmental stage NA

Sequence quality information CDS feature Complete CDS Kozak sequence NA PolyA NA Vector/adapter sequence NA Frame shift NA Remaining intron NA Splice site acceptor (NAGNAG) NA Transcript quality feature NA Notes UM gene supported by high quality evidences.

GAGATGGAGTCTCACTTTGTCGCCCAAGCTGGAGCGCAATGGTGCAATCT CTGCTCACTGCAACCTCCCCCTCCCGGGTTCAAGCCATTCTCCTCCTCAG TCTCCCGAGTAGCTAGGACTACAGGAGTGTGCCACCTCGCCCGGCTAATT TCTGTATTTTTAGTGGAGATGTGGTTTCACCATGTTGGCCAGGATGGTCT CAAACTGCTGACCTTGTGATCTGCCTGCCTCGGCCTCTCAAAGTGCTGGG ATTACAGGCATGAGTCACCGCGTCCGGCCAGGAACCTCTTAACTTCTTTT GTGATTTTGTGGGGAACAATCTGGGCAACAGTATTGAACTAAGAAAGGTT TTCAACCCTGGGCAGGTCACCACACTTCTTGGTACTCAGCCCCCACCCAG TGATGCTGTTTGAGGCTGTGCACCTGCTGGGGACCGTGTGTGGTGGGAGG GGCTCCAGAGAGTGCTAGAGTTAATGCTTTTCTGTTTAGAAGACTATATG CTTCTCATGGCCTCTTGGAGTTCAGCAGGGCCTTAGAAAGCATCTCCCAA CCACAGAGACGCGCTGCCTGGCTTTCCTGATGATGATGATTTGGCCTGAT CTTGGACACCTGCGGTAATAGAGAGCTCACTACCCCTCACGAGGTTCCTT GCGCCAGCGCGGGGAAGCCTCCCTCCATCTGCAGGTGGGCCTCCCCTGTG CTGGTCAGCTCCCTGGTGTGTGTTACACAGGACACAGAGAAGATCATCCT GCGGGGCCTCCCTGGAGGAAAGGAGGCTGCCTGTGTGGGTAGGTGAGTGG AGGCCTGCAGGCAGCAGAAAGACCACATCGAAAGCCCATGGGCACAGCCG ATGAACAGACCCCCACGAGCAAGAACACCACAAGACGCAGGTGGAGGGAC GGGGCCCATGGGGTCTGGATCTGATGCTAGGTGAACAAGGAGGCGCTGCA GGGTTTTAAGCAGGAGAGCCACAAAGGTTGAACTCTGGGGTGCAGCTGGG GTGGGGATGACATCAGTGATGGCAGCAAAGGAACGGATCCGAGACCTTTG TTGCAGAAGGAGCCGTCAGCCTCGCCTATGCCCAGAGATGGGATGCGGAG CGGAGGGTAAGCCCGGGACTCTGGCGGGAGCCACTGAGGGGATGAAGGTG TCACTGCTCCGGTGGGGAATGGAGGGGGGAGATGTGAGACATTTACTGGG AAAAATCGAAAGAGTACCACTTAGGTTATGCAAAATGCTCCATCCCAATG TGAAGACAAGATCCGACTCCGAGCAGCTCGCCTTCCCTCCTCGGCCTGGG GAGCGCTTCTGGAGCCCGGAGAAGAGGCCCCTCCAGGAGGCGGCGGCCGA AGGCCAGGGAGAGTGCGGGGCGGCCGAGGGCCCCAAGCGAGGCGGGACTG GCCCCGAGAGGCGCAGCCCTGCCCACCCGCCCGCGCCCGCGCTCGCGCCC GCTCACCTCCAGCGCCTGGCCCAGCTCCAGGTCGAAGGTGACCACGCACA CACACTCCAGCCAGGCGGAGAAGCGCGCCCAGGGCGCCGCCGGGGTCCGC GCCGCGCGACCTGAAGACGTGGGTCCAGCCGCGCCCAGGCAGCCGCGAGC CCGGCGAGGCCCTGTGCCCAACAGCGCGTCCATGGCGGCGGCCGCGGGTT GCCGGGGAAAC

Gene structure information

H-Inv cluster ID		HIX0023340
Genomic location	Chromosome	22
	Location	22q13.33
	Position	50763785- 50765445
	Strand	+
Possible duplicated location(s)		NA
Gene structure		1 exon(s)
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	NA
	KEGG GENES	NA
	GeneCard	NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome alignment;

Predicted CDS information HIP ID HIP000335428 Predicted CDS 1007..1564;  185[aa];  Orientation:+2;  Codon Adaptation Index (CAI). 0.737

MTSVMAAKERIRDLCCRRSRQPRLCPEMGCGAEGKPGTLAGATEGMKVSL LRWGMEGGDVRHLLGKIERVPLRLCKMLHPNVKTRSDSEQLAFPPRPGER FWSPEKRPLQEAAAEGQGECGAAEGPKRGGTGPERRSPAHPPAPALAPAH LQRLAQLQVEGDHAHTLQPGGEARPGRRRGPRRAT*

Gene function information

H-Inv ID		HIT000005681
H-Inv cluster ID		HIX0023340
Accession number		AK022407.1
CAGE tag ID		NA
EST ID		NA
Transcript feature		Representative transcript;
Coding potential		Protein coding;
Definition		Similar to Protein FAM116A;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (Q8IWF6)  [Identity/coverage = 80.769%/4.28%] to Homo sapiens (Human). protein.
Experimental evidence		Protein evidence
PubMed ID		12693554;  14702039;  15489334;  ALL;
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
	DDBJ	NA
	UniProt	FAM116A
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000335428
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	NA
	KEGG GENES	NA
	GeneCard	NA *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Human curated
Notes		UM gene supported by high quality evidences.
Related H-InvDB links		Gene family;  Similarity Search Tool;  TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

NA

Subcellular localization information

Last modified:20-Apr-2012

WoLF PSORT	extracellular;  cytosol;  nuclear;
Target P	Not predicted
SOSUI	soluble protein
TMHMM	soluble protein
PTS1	Not targeted
Related H-InvDB links	LIFEdb;  JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information

Last modified:20-Apr-2012

Tissue-specific expression			NA
Probe information	AceGene		AGhsB070404;
	Affymetrix GeneChip	HG-Focus	NA
		HG-U133	220713_at;
		HG-U133A	220713_at;
		HG-U133A_2	220713_at;
		HG-U133B	NA
		HG-U133_Plus_2	220713_at;
		HG-U95	NA
		HG-U95A	NA
		HG-U95B	NA
		HG-U95C	NA
		HG-U95D	NA
		HG-U95E	NA
		HG-U95Av2	NA
		HuEx-1_0	NA
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	NA
		Whole Human Genome Oligo Microarray:PGID247	A_23_P95070;
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Single Nucleotide Polymorphism (SNP) and indel  Location Variation dbSNP ID Strand CDS/UTR Translation 106 .. 106 C/T rs116865136 + 5'UTR 165 .. 165 G/A rs117272846 + 5'UTR 265 .. 265 T/C rs117459523 + 5'UTR 273 .. 273 T/C rs4074135 + 5'UTR 323 .. 323 G/A rs114777569 + 5'UTR 624 .. 624 A/C rs76550697 + 5'UTR  Microsatellite (Short Tandem Repeat, STR) No data available  Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD) No data available

Repeat  Type Start End Strand AluSg 1 279 - L3 513 639 - Database links Human-Gene diversity Of Life-style related Diseases(H-GOLD);  Related H-InvDB links VaryGene;  Repeat Mask Viewer;