H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
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Chromosome number
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Definition*
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---
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H-Invitational ID:
HIT000004416
Accession number:
AK001942
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to Protein FAM49A.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AK001942.1
CAGE tag ID
NA
EST ID
NA
Clone Number
PLACE1005181
Experimental resources
NBRC
;
HGPD
;
Antibody (FAM49A)
;
Catalog (FAM49A)
;
Sequence data provider
Project:FLJ; Provider:FLJ/HRI;
Annotation project
H-Invitational FLcDNA
Length of cDNA
3075[bp] (No. of exon:3)[A:872 T:928 G:658 C:617]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
placenta
Develpmental stage
NA
Sequence quality information
CDS feature
N-truncated
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
Truncation;
Notes
NA
AAGTCATGCTGGAAACTCCGGAGTACAGAAGTAGGTTTACGAGTGAAGAG ACCCTGATGTTCTGCATGAGGGTGATGGTGGGAGTCATCATCCTCTATGA CCATGTCCACCCTATGGGAGCTTTCTGCAAGACATCCAAGATCGATATGA AAGGCTGCATAAAAGTTTTGAAGGAGCAGGCCCCAGACAGTGTGGAGGGG CTGCTAAATGCCCTCAGGTTCACTACAAAGCACTTGAACGATGAATCAAC TTCCAAACAGATTCGAGCAATGCTTCAGTAGAGCTCTGCTCAAAGAAGAG GATCTATGTGCTGACCTCAGAAGATGTATATGTTTACATAATTTAATACA GATTGATGTTAATACTTGTGTATTTACATAACCGTTTCCTTCTTGTCACT GAAATATATGGACCTTAATTTGTATCCTGACTGACTCAACCCAGCAGAGC ATAAATTGACTTGAGAGCCTTACCTTTGATGTCTGAAATGAAACCCCCTT CTCCAAAGGCAAAATTCGGAGACTTTGATCTTTGCTACTGGAGTCCTTTA ACAACACCTATAACGATAAAAAATTCCTAATTGTTTGTGGTAGTATTTTA ATTCTAGATGTGTTATCTCTCTGGGAAGTATAGTTTATAGAAACACAAAA TATTTGATTTCCTGTGTCGGTTCAGCTACAAGAAACACAACTGTTATCTT GACAGAGGAAGAGAGGAATCCAAGAAAAATGCATGTGGAGAATTAAACCC AAGTGTTTCGAATTCAGCACACCCCCTCTCTGTCCTCAGACTGCAGTCCA CACGTGCAACTTTTCTGTTTGCACGTGTTTTATTAATCAGCATACTCCTT TTCTGTTTGGATTTATATCCCTCTAATGTTCTCCTTTAATTTCACATGAA AAAAAAATCTGTATTTTTTTCAGTTAGTGGGAGAGCAGCAGAAATAGATA GATGTGATGTTGCCACTGGACTGATGAAGGTGGCTGTCTTGGAACTGGGA GACAGGTCCTCAGAGGTGCACTCAGGCAACAGGACAGCCATCTCTCTGCT TCAGCCCTCTGCCTACAGGAATTAGGGAAATGGAGCTCTGGCTTTGAAGT TATTTGTGAGTTTAGCAACCTTCCAGTTACCTGCAGAGTTCTGGGTGCAC AGCCACCCCTCATAAGAGCCCTGTTCTCTGAAGACCATTCATATGAGAAC AAAGGTCTAGGATACTGCATTAGTTACCAGAAAACTAGGGGAATTTAGAG GGAAAAAAAATCCATGTTTTCTATTTCCCAGGTTTTTAAAAAGTAGCTCT TCCCCAACCCCGTTGCTAGCTTGTTGCAATATAAAAGCCCTGGTGCACCT GAATTTACTCCTGGCCTTACTAATGATTCATAATGTGATCTTGAGAAATG TGTTTAAGCTTTCTGAGTCTTAACCTCTTTGTCTCTAAAATGGGCAATTA AAACAATCTTCAAGAGCCCTGTAAGGTTAATGCCGATAAAATGACTGACT CCGCCCTTCTTCCTTAGTACGTAGTATCCAGCAAGCATTTGCCCCACCTT GTCTTGTTGATGAACAATATTATGAAGCCTGCAGTCATTCTCTCTGTACA TCAGAGCTTAGTTCGAATGGAATCATGAAAATCTCTGATTCTGACCTCCT AAGGAAAAATGAAACCCAGAGGATGTGGTCATACAGGATGGCTCCCATGT GGGCCTAGAACCCAGGATGCTTCACTCTTGACTCCATGCTCTTCCTTTTA TACCATGTGGCTGTGAATACATACTATGGGATGGGATTCAACCCTTCTAA GTAAATCCTCAGTCTGGTCTATATTGTTACTTGCCTGTTTCCACTAGAAG GAGTCACCCAGGCATTTAGTGAATGATAATCCTAGAAGTTGAGTCTGAGT ACATCAGAGTTTGGCATTATTTGCAACATCCCAGGAATGAGCTATAAGAC TCCATTGCTTTCTGGACTTTAGTGACCAGCTGATCTTCCCTTGGATCCTC CAGTAAAGGGGAAAAAATACTTGTCTTATGTTGTTTTAGCAAGGGAGTTC AGCCAAGTGACAGGAAAGATTCCCTGGTCTGCATCTAAACCTTAGTCAAC AGAAGGAAAAGGCTCTTTTCCTTGGAGATTTTCAAGTTGAAAAAGTACAG CTGCTTGGATGGAGTTTCTCTCATCAGAATAGAAATATGCTAGGTGGTCT TCAAGAACTTTTTGAACCTACAGATTCTAAACCTTAGAGGAAGCCAGAAT ATGTGATCATACCAGGTGAGGAAAGTTAGGAGATATTCATCTTAAGAGAT ATCCTATTTGGCAGTCACATGTTACACTTGAGCAACAATTGTCTAGGCTA GAAATATAGAACCACACAATATTTATCATCATTGGGTCAATTTCTCCCCC TCTATCAAGTGAGGAGATTAAGGCTTAAAGAAAGGAAAGGACTTGCCAGC CACCACAGGGCTCATGAGGGGCTTGAACCCATGTCGTGTGTCTCTACCAC AGCTGACTCTCAGCTGGCTAATGGAGAAAATGTGAGGAATTACCTGTCAA ATTAGATTGAGCTCAGAGTAAATAGATGAGCACATTTATAACTCTAAATT AGACTTTCTATCAAATGGGACCAAACATATGGAAGGGGCTGCTGTCCTGC CTCAATTTAGCCAAGACTTGTCTTGTCTCAAAGCCAAGACTCAGCAGTAC ATGGATTCTGAGAAGTCCAGGGTCTGAATTGTTGTCTCTGATTACTGGAA GGACAGGTTAACTGAATGTCTGTGATCACTAACAGGTGATGGGCTTTGTG CCCACTCCAGAGATATTGTGGGAGACAAATTCTTTTAACAGCCTGTCCTC CCGGCATCAGGAGTCATTGAACAATCATGGATTGTTGTGTTTGGGATTTT TTTTTTTTTTGGCTTTGTTTTTGGTTTTTGTGTGTGTGTGTGTGTGCTGC ATGCACATGCGTCCAAGACTTATGGGTGGTTTAGGGGAAAGTGCTAGCAA CAGTGTCAATGTCATTGTTAACTATATTTCATATTTGAGGTCTCATTGTT TTCAAATAAACAGTGTTTTCCATGG
Gene structure information
H-Inv cluster ID
HIX0001843
Genomic location
Chromosome
2
Location
2p24.2
Position
16731409- 16740854
Strand
-
Possible duplicated location(s)
NA
Gene structure
3 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:81553
;
KEGG GENES
KEGG GENES(81553)
;
GeneCard
FAM49A
;
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000132131
Predicted CDS
3..281; 92[aa]; Orientation:+3;
Codon Adaptation Index (CAI).
0.775
VMLETPEYRSRFTSEETLMFCMRVMVGVIILYDHVHPMGAFCKTSKIDMK GCIKVLKEQAPDSVEGLLNALRFTTKHLNDESTSKQIRAMLQ*
Gene function information
H-Inv ID
HIT000004416
H-Inv cluster ID
HIX0001843
Accession number
AK001942.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Similar to Protein FAM49A.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_110424
) [Identity/coverage = 98.913%/28.48%] to Homo sapiens protein.
Experimental evidence
Protein evidence
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
FAM49A
HGNC aliases
NA
HGNC name
family with sequence similarity 49, member A
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000132131
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:81553
;
KEGG GENES
KEGG GENES(81553)
;
GeneCard
FAM49A
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
extracellular; cytosol; golgi apparatus; mitochondria;
Target P
Other
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
AGhsB240902;
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
208092_s_at; 209683_at;
HG-U133A
208092_s_at; 209683_at;
HG-U133A_2
208092_s_at; 209683_at;
HG-U133B
NA
HG-U133_Plus_2
208092_s_at; 209683_at;
HG-U95
35143_at; 64419_at;
HG-U95A
35143_at;
HG-U95B
NA
HG-U95C
64419_at;
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2471007; 2471008; 2471009; 2541716; 2541717; 2541718; 2541720; 2541723;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
A_23_P21560;
Whole Human Genome Oligo Microarray:PGID247
A_23_P21560;
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
146 .. 146
T/C
rs202029542
-
CDS
Synonymous[Asp48Asp]
236 .. 236
G/A
rs146795138
-
CDS
Synonymous[Leu78Leu]
284 .. 284
C/T
rs201324134
-
3'UTR
292 .. 292
A/T
rs187539517
-
3'UTR
332 .. 332
G/A
rs13404748
-
3'UTR
510 .. 510
C/T
rs28490426
-
3'UTR
517 .. 517
C/T
rs78495239
-
3'UTR
528 .. 528
A/G
rs139923046
-
3'UTR
542 .. 542
A/C
rs190729471
-
3'UTR
543 .. 543
G/A
rs188384201
-
3'UTR
557 .. 557
C/T
rs7552
-
3'UTR
697 .. 697
T/C
rs190112266
-
3'UTR
719 .. 719
T/G
rs147901216
-
3'UTR
772 .. 772
C/T
rs186132487
-
3'UTR
957 .. 957
A/C
rs5007483
-
3'UTR
1041 .. 1041
T/G
rs144678800
-
3'UTR
1046 .. 1046
C/T
rs76816458
-
3'UTR
1070 .. 1070
A/G
rs10182313
-
3'UTR
1191 .. 1191
A/G
rs140821557
-
3'UTR
1263 ^ 1264
-/C
rs34999982
-
3'UTR
1337 .. 1337
G/C
rs150555071
-
3'UTR
1397 .. 1397
A/G
rs181447569
-
3'UTR
1428 .. 1428
T/C
rs10172734
-
3'UTR
1458 .. 1458
C/A
rs141752407
-
3'UTR
1546 .. 1546
A/G
rs115727761
-
3'UTR
1614 .. 1614
C/T
rs148476014
-
3'UTR
1844 .. 1844
C/T
rs144649696
-
3'UTR
1938 .. 1938
T/C
rs141519598
-
3'UTR
2049 .. 2049
T/C
rs191215873
-
3'UTR
2091 .. 2091
C/A
rs4263114
-
3'UTR
2207 .. 2207
A/C
rs4240234
-
3'UTR
2238 .. 2238
A/G
rs13032689
-
3'UTR
2460 .. 2460
G/A
rs138506495
-
3'UTR
2546 .. 2546
G/A
rs186408032
-
3'UTR
2595 .. 2595
T/C
rs181027379
-
3'UTR
2607 .. 2607
T/C
rs189079330
-
3'UTR
2677 .. 2677
C/T
rs60444781
-
3'UTR
2695 .. 2695
C/T
rs144605748
-
3'UTR
2719 .. 2719
A/G
rs7578073
-
3'UTR
2839 ^ 2840
-/C
rs143648127
-
3'UTR
2853 .. 2853
G/A
rs137989534
-
3'UTR
2896 ^ 2897
-/T/TT
rs57899785
-
3'UTR
2908 ^ 2909
-/T/TT
rs72047801
-
3'UTR
2909 .. 2909
T/G
rs75730706
-
3'UTR
2929 .. 2929
T/C
rs150241862
-
3'UTR
2930 .. 2930
G/T
rs184331937
-
3'UTR
2932 .. 2932
G/T
rs181325164
-
3'UTR
2973 .. 2973
T/C
rs15653
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
MIRb
1347
1494
+
MIR3
2378
2494
-
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;