H-InvDB x AHG DB
Transcript view
H-InvDB_9.0 released on May 27, 2015.
Search by for Advanced Search
Home Quick guide Navi BLAST Site map Download Contact us Help
H-Invitational ID: HIT000004416 Accession number: AK001942 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Protein FAM49A.
 
 

Transcript original information
Accession number AK001942.1
CAGE tag ID NA
EST ID NA
Clone Number PLACE1005181
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (FAM49A) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (FAM49A);
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 3075[bp] (No. of exon:3)[A:872 T:928 G:658 C:617]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type placenta
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature Truncation; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0001843
Genomic location  G-integra Help Chromosome 2
Location 2p24.2
Position 16731409- 16740854
Strand -
Possible duplicated location(s) NA
Gene structure 3 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:81553
KEGG GENES KEGG GENES(81553)
GeneCard GeneCardFAM49A*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000132131
Predicted CDS 3..281;  92[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.775

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000004416
H-Inv cluster ID Locus viewHIX0001843
Accession number AK001942.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Protein FAM49A.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_110424)  [Identity/coverage = 98.913%/28.48%] to Homo sapiens protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol FAM49A
HGNC aliases NA
HGNC name family with sequence similarity 49, member A
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000132131
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:81553
KEGG GENES KEGG GENES(81553)
GeneCard GeneCardFAM49A*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  cytosol;  golgi apparatus;  mitochondria; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsB240902; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 208092_s_at;  209683_at; 
HG-U133A 208092_s_at;  209683_at; 
HG-U133A_2 208092_s_at;  209683_at; 
HG-U133B NA
HG-U133_Plus_2 208092_s_at;  209683_at; 
HG-U95 35143_at;  64419_at; 
HG-U95A 35143_at; 
HG-U95B NA
HG-U95C 64419_at; 
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2471007;  2471008;  2471009;  2541716;  2541717;  2541718;  2541720;  2541723; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P21560; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P21560; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
146 .. 146 T/C rs202029542 - CDS Synonymous[Asp48Asp]
236 .. 236 G/A rs146795138 - CDS Synonymous[Leu78Leu]
284 .. 284 C/T rs201324134 - 3'UTR
292 .. 292 A/T rs187539517 - 3'UTR
332 .. 332 G/A rs13404748 - 3'UTR
510 .. 510 C/T rs28490426 - 3'UTR
517 .. 517 C/T rs78495239 - 3'UTR
528 .. 528 A/G rs139923046 - 3'UTR
542 .. 542 A/C rs190729471 - 3'UTR
543 .. 543 G/A rs188384201 - 3'UTR
557 .. 557 C/T rs7552 - 3'UTR
697 .. 697 T/C rs190112266 - 3'UTR
719 .. 719 T/G rs147901216 - 3'UTR
772 .. 772 C/T rs186132487 - 3'UTR
957 .. 957 A/C rs5007483 - 3'UTR
1041 .. 1041 T/G rs144678800 - 3'UTR
1046 .. 1046 C/T rs76816458 - 3'UTR
1070 .. 1070 A/G rs10182313 - 3'UTR
1191 .. 1191 A/G rs140821557 - 3'UTR
1263 ^ 1264 -/C rs34999982 - 3'UTR
1337 .. 1337 G/C rs150555071 - 3'UTR
1397 .. 1397 A/G rs181447569 - 3'UTR
1428 .. 1428 T/C rs10172734 - 3'UTR
1458 .. 1458 C/A rs141752407 - 3'UTR
1546 .. 1546 A/G rs115727761 - 3'UTR
1614 .. 1614 C/T rs148476014 - 3'UTR
1844 .. 1844 C/T rs144649696 - 3'UTR
1938 .. 1938 T/C rs141519598 - 3'UTR
2049 .. 2049 T/C rs191215873 - 3'UTR
2091 .. 2091 C/A rs4263114 - 3'UTR
2207 .. 2207 A/C rs4240234 - 3'UTR
2238 .. 2238 A/G rs13032689 - 3'UTR
2460 .. 2460 G/A rs138506495 - 3'UTR
2546 .. 2546 G/A rs186408032 - 3'UTR
2595 .. 2595 T/C rs181027379 - 3'UTR
2607 .. 2607 T/C rs189079330 - 3'UTR
2677 .. 2677 C/T rs60444781 - 3'UTR
2695 .. 2695 C/T rs144605748 - 3'UTR
2719 .. 2719 A/G rs7578073 - 3'UTR
2839 ^ 2840 -/C rs143648127 - 3'UTR
2853 .. 2853 G/A rs137989534 - 3'UTR
2896 ^ 2897 -/T/TT rs57899785 - 3'UTR
2908 ^ 2909 -/T/TT rs72047801 - 3'UTR
2909 .. 2909 T/G rs75730706 - 3'UTR
2929 .. 2929 T/C rs150241862 - 3'UTR
2930 .. 2930 G/T rs184331937 - 3'UTR
2932 .. 2932 G/T rs181325164 - 3'UTR
2973 .. 2973 T/C rs15653 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MIRb 1347 1494 +
MIR3 2378 2494 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer