H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID:
HIT000000192
Accession number:
AB007944
Created date:
26-Mar-2013
Last modified:
20-Apr-2012
Definition:
Glycosaminoglycan xylosylkinase precursor.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
301 .. 301
C/G
rs72707294
+
5'UTR
316 .. 316
G/A
rs111851052
+
5'UTR
558 .. 558
G/A
rs11802142
+
CDS
Synonymous[Arg74Arg]
747 .. 747
G/A
rs61731084
+
CDS
Synonymous[Pro137Pro]
975 .. 975
T/G
rs115005196
+
CDS
Nonsynonymous[Asp213Glu]
1424 .. 1424
T/C
rs112282462
+
CDS
Nonsynonymous[Ile363Thr]
1597 .. 1597
T/C
rs73045635
+
3'UTR
1678 .. 1678
A/G
rs4456058
+
3'UTR
1685 .. 1685
G/A
rs2025584
-
3'UTR
1988 .. 1988
T/-
rs11299711
+
3'UTR
1990 .. 1990
T/-
rs58197730
+
3'UTR
2047 .. 2047
C/A
rs77755493
+
3'UTR
2114 .. 2114
A/G
rs115929400
+
3'UTR
2140 .. 2140
T/C
rs112020970
+
3'UTR
2227 ^ 2228
-/G
rs34534731
+
3'UTR
2256 .. 2256
G/T
rs9726948
+
3'UTR
2376 .. 2376
A/C
rs116234027
+
3'UTR
2378 .. 2378
A/G
rs16853612
+
3'UTR
2513 .. 2513
C/T
rs9725887
+
3'UTR
2556 .. 2556
T/C
rs9725888
+
3'UTR
2586 .. 2586
A/C
rs4652352
+
3'UTR
2602 .. 2602
C/T
rs72709441
+
3'UTR
2625 ^ 2626
-/C
rs35222556
+
3'UTR
2736 .. 2736
G/T
rs4652353
+
3'UTR
2744 .. 2744
C/T
rs114807247
+
3'UTR
2746 .. 2746
T/C
rs34488634
+
3'UTR
2810 .. 2810
C/T
rs4652354
+
3'UTR
3198 .. 3198
T/G
rs79542318
+
3'UTR
3267 .. 3267
G/C
rs56006430
+
3'UTR
3297 .. 3297
C/A
rs9730439
+
3'UTR
3825 .. 3825
G/T/C/A
rs3766626
-
3'UTR
3834 ^ 3835
-/C
rs35980145
+
3'UTR
3839 .. 3839
G/A
rs3766625
-
3'UTR
4225 .. 4225
G/A
rs16853619
+
3'UTR
4469 ^ 4470
-/G
rs35292643
+
3'UTR
4486 .. 4486
G/C
rs116023119
+
3'UTR
4588 .. 4588
G/A
rs2018786
+
3'UTR
4692 .. 4692
A/T
rs74837593
+
3'UTR
4858 .. 4858
C/T
rs78609757
+
3'UTR
4985 .. 4985
C/T
rs115052587
+
3'UTR
4991 .. 4991
A/G
rs76363748
+
3'UTR
5009 .. 5009
A/G
rs16853621
+
3'UTR
5089 .. 5089
A/T
rs80245804
+
3'UTR
5291 .. 5291
A/G
rs2147768
-
3'UTR
5641 .. 5641
G/C
rs61823795
+
3'UTR
5643 .. 5643
C/T
rs61823796
+
3'UTR
5653 ^ 5654
-/T
rs71700716
+
3'UTR
5759 .. 5759
G/A
rs9249
+
3'UTR
5768 .. 5768
A/C
rs115640057
+
3'UTR
5772 .. 5772
A/G
rs117216397
+
3'UTR
5779 .. 5779
A/C
rs116166770
+
3'UTR
5786 .. 5786
C/A
rs1220
+
3'UTR
5834 .. 5834
G/T
rs11540488
-
3'UTR
5838 .. 5838
T/A
rs15325
+
3'UTR
Microsatellite (Short Tandem Repeat, STR)
Location
Variation
Strand
75..89
(ggc)5
+
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
AluSx1
2727
3043
-
AluSx
4330
4625
+
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;