H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0214558 Created date: 20-May-2015 Last modified: 27-May-2015
Definition: Similar to Rab3 GTPase-activating protein catalytic subunit; RAB3 GTPase-activating protein 130 kDa subunit; Rab3-GAP p130; Rab3-GAP;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0214558
Genomic location  G-integra Help Chromosome 2
Location 2q21.3
Position 135847224- 135933964
Strand +
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:22930
KEGG GENES KEGG GENES(22930)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000090721HIT000024387HIT000012672HIT000094586HIT000427984HIT000090071
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-6 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000090721
Accession number BC022977.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Rab3 GTPase-activating protein catalytic subunit; RAB3 GTPase-activating protein 130 kDa subunit; Rab3-GAP p130; Rab3-GAP;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q15042)  [Identity/coverage = 99.632%/55.35%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q21.3
Position 135891428- 135927545
Strand +
Gene structure 10 exons
 
TOP 1-6 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000024387
Accession number AL096752.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Rab3 GTPase-activating protein catalytic subunit; RAB3 GTPase-activating protein 130 kDa subunit; Rab3-GAP p130; Rab3-GAP;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q15042)  [Identity/coverage = 99.522%/21.3%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q21.3
Position 135919067- 135927857
Strand +
Gene structure 6 exons
 
TOP 1-6 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000012672
Accession number AK056058.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Rab3 GTPase-activating protein catalytic subunit; RAB3 GTPase-activating protein 130 kDa subunit; Rab3-GAP p130; Rab3-GAP;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q15042)  [Identity/coverage = 100.0%/11.52%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q21.3
Position 135921606- 135927544
Strand +
Gene structure 2 exons
 
TOP 1-6 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000094586
Accession number BC036732.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Rab3 GTPase-activating protein catalytic subunit isoform 1.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001165906)  [Identity/coverage = 99.13%/35.63%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q21.3
Position 135907936- 135927545
Strand +
Gene structure 7 exons
 
TOP 1-6 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000427984
Accession number AK309118.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Rab3 GTPase-activating protein catalytic subunit; RAB3 GTPase-activating protein 130 kDa subunit; Rab3-GAP p130; Rab3-GAP;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q15042)  [Identity/coverage = 99.465%/19.06%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q21.3
Position 135911213- 135926815
Strand +
Gene structure 6 exons
 
TOP 1-6 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000090071
Accession number BC020303.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q21.3
Position 135926246- 135927009
Strand +
Gene structure 1 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms NA
Position of alternative splicing isoforms NA
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000427984Splicing isoformHIT000090721Splicing isoformHIT000024387Splicing isoformHIT000012672
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0214558
Representative H-Inv ID Representative H-Inv IDHIT000090721
Accession number BC022977.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Rab3 GTPase-activating protein catalytic subunit; RAB3 GTPase-activating protein 130 kDa subunit; Rab3-GAP p130; Rab3-GAP;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q15042)  [Identity/coverage = 99.632%/55.35%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000126492
No. of interaction 4
Interaction partner(s) HIP000028551HIP000038339HIP000054982HIP000127790
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:22930
KEGG GENES KEGG GENES(22930)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsB140406; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 212932_at;  213530_at;  213531_s_at; 
HG-U133A 212932_at;  213530_at;  213531_s_at; 
HG-U133A_2 212932_at;  213530_at;  213531_s_at; 
HG-U133B NA
HG-U133_Plus_2 212932_at;  213530_at;  213531_s_at; 
HG-U95 33417_at;  33418_at; 
HG-U95A 33417_at;  33418_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2507313;  2507315;  2507317;  2507321;  2507323;  2507331;  2507333;  2507335;  2507337;  2507338;  2507339;  2507340;  2577707;  2577708; 
HuGeneFL D31886_at; 
Agilent Human 1A Oligo Microarray:PGID215 A_23_P50942; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P50942; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator