H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Inv cluster ID: HIX0201992 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Similar to Mitochondrial ornithine transporter 1; Solute carrier family 25 member 15;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0201992
Genomic location  G-integra Help Chromosome 13
Location NA
Position 41371123- 41495910
Strand -
Antisense cluster ID(s) HIX0011260 overlap at CDSs (all)
Database links RefSeq NR_038259; 
Ensembl ENST00000304932;  ENST00000494063;  ENST00000379515;  ENST00000432905;  ENST00000467676;  ENST00000458118;  ENST00000456963; 
Entrez Gene Entrez Gene ID:283507;  Entrez Gene ID:100616668; 
KEGG GENES KEGG GENES(100616668); 
GeneCard GeneCardSUGT1P3;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Cluster member H-Inv ID(s) HIT000098447;  HIT000021848;  HIT000038977;  HIT000018099;  HIT000046713;  HIT000066932; 
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 
Mini-G Locus map Locus map

 
TOP 1-6 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000098447
Accession number BC047078.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Mitochondrial ornithine transporter 1; Solute carrier family 25 member 15;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9Y619)  [Identity/coverage = 94.565%/30.56%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 13
Location NA
Position 41371127- 41495886
Strand -
Gene structure 6 exons
 
TOP 1-6 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000021848
Accession number AK096993.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Mitochondrial ornithine transporter 1; Solute carrier family 25 member 15;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9Y619)  [Identity/coverage = 94.565%/30.56%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location NA
Position 41372505- 41495874
Strand -
Gene structure 6 exons
 
TOP 1-6 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000038977
Accession number BC020814.1
CAGE tag ID NA
EST ID NA
Coding potential Pseudogene candidate; 
Definition Pseudogene candidate (Suppressor of G2 allele of SKP1 homolog; Protein 40-6-3; Sgt1;)
Similarity category  Help Category: Pseudogene candidate(Category VII).
Pseudogene candidate.
Gene symbol/name HGNC symbol SUGT1P3 
HGNC aliases "SGT1, suppressor of G2 allele of SKP1 like 1 (S. cerevisiae)" 
HGNC name suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 13
Location NA
Position 41486026- 41495910
Strand -
Gene structure 3 exons
 
TOP 1-6 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000018099
Accession number AK093232.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Mitochondrial ornithine transporter 1; Solute carrier family 25 member 15;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9Y619)  [Identity/coverage = 96.875%/10.63%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 13
Location NA
Position 41373449- 41382169
Strand -
Gene structure 3 exons
 
TOP 1-6 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000046713
Accession number AK126840.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Suppressor of G2 allele of SKP1 homolog; Protein 40-6-3; Sgt1;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9Y2Z0)  [Identity/coverage = 96.667%/8.22%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 13
Location NA
Position 41469454- 41489080
Strand -
Gene structure 2 exons
 
TOP 1-6 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000066932
Accession number AF086053.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name HGNC symbol SUGT1P3 
HGNC aliases "SGT1, suppressor of G2 allele of SKP1 like 1 (S. cerevisiae)" 
HGNC name suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3 
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location NA
Position 41486026- 41486427
Strand -
Gene structure 1 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000018099;  Splicing isoformHIT000038977;  Splicing isoformHIT000098447;  Splicing isoformHIT000046713; 
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0201992
Representative H-Inv ID Representative H-Inv IDHIT000098447
Accession number BC047078.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Mitochondrial ornithine transporter 1; Solute carrier family 25 member 15;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9Y619)  [Identity/coverage = 94.565%/30.56%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol SUGT1P3 
HGNC aliases "SGT1, suppressor of G2 allele of SKP1 like 1 (S. cerevisiae)" 
HGNC name suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000339426
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NR_038259; 
Ensembl ENST00000304932;  ENST00000494063;  ENST00000379515;  ENST00000432905;  ENST00000467676;  ENST00000458118;  ENST00000456963; 
Entrez Gene Entrez Gene ID:283507;  Entrez Gene ID:100616668; 
KEGG GENES KEGG GENES(100616668); 
GeneCard GeneCardSUGT1P3;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Related H-InvDB links G-integraG-integra;  PPI viewerPPI view;  H-DBASH-DBAS;  Gene familyGene family;  Similarity Search ToolSimilarity search tool;  TACTTACT; 
Gene expression information   H-ANGEL DNAProbeLocator Last modified:20-Apr-2012
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator		 AceGene NA
Affymetrix
GeneChip		 HG-Focus NA
HG-U133 236770_at;  240409_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 236770_at;  240409_at; 
HG-U133_Plus_2 236770_at;  240409_at; 
HG-U95 54376_at;  72879_at;  75368_at; 
HG-U95A NA
HG-U95B 54376_at; 
HG-U95C NA
HG-U95D NA
HG-U95E 72879_at;  75368_at; 
HG-U95Av2 NA
HuEx-1_0 3486738;  3486739;  3486743;  3486788;  3490631;  3510964;  3510965;  3510973;  3510974;  3510975;  3510982;  3511017;  3511018; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_32_P101570; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator; 

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  109350;  109543;  194370;  600631;  601499;  604595;  605844;  606643;  607584;  608049;  609129;  612110; 
Disease related mutation NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(283507);  Entrez Gene ID:(100616668); 
Disease Entrez Gene ID:(283507);  Entrez Gene ID:(100616668); 
Gene function Entrez Gene ID:(283507);  Entrez Gene ID:(100616668); 
Substance Entrez Gene ID:(283507);  Entrez Gene ID:(100616668); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA;