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H-InvDB_8.3 released on March 26, 2013.
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H-Inv cluster ID: HIX0057992 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: HLA class II histocompatibility antigen, DM alpha chain precursor.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0057992
Genomic location  G-integra Help Chromosome 6_mann_hap4
Location NA
Position 4373601- 4395720
Strand -
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl ENST00000486785;  ENST00000419041;  ENST00000456800;  ENST00000433630;  ENST00000466043;  ENST00000469705;  ENST00000458066;  ENST00000452615;  ENST00000422196;  ENST00000418042;  ENST00000441375;  ENST00000420299;  ENST00000485999;  ENST00000487786;  ENST00000461059;  ENST00000464392;  ENST00000416297;  ENST00000489879;  ENST00000481354;  ENST00000479292;  ENST00000475844;  ENST00000383228;  ENST00000472934;  ENST00000434337;  ENST00000495512;  ENST00000453490;  ENST00000466370;  ENST00000477208;  ENST00000465136;  ENST00000487750;  ENST00000419231;  ENST00000479386;  ENST00000426176;  ENST00000472833;  ENST00000437285;  ENST00000467732;  ENST00000452330;  ENST00000466040;  ENST00000470656;  ENST00000477541;  ENST00000383227;  ENST00000480785;  ENST00000412394;  ENST00000489001;  ENST00000450601;  ENST00000452434;  ENST00000451148;  ENST00000491978;  ENST00000432991;  ENST00000473725;  ENST00000451753;  ENST00000479036;  ENST00000454298;  ENST00000490859;  ENST00000472231;  ENST00000493659;  ENST00000462225;  ENST00000475284;  ENST00000460128;  ENST00000383230;  ENST00000452703;  ENST00000422832;  ENST00000477135;  ENST00000475627;  ENST00000440717;  ENST00000457285;  ENST00000466446;  ENST00000469049;  ENST00000494230;  ENST00000498081;  ENST00000435503;  ENST00000416806; 
Entrez Gene Entrez Gene ID:3108; 
KEGG GENES KEGG GENES(3108); 
GeneCard GeneCardHLA-DMA;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Cluster member H-Inv ID(s) HIT000035253_05;  HIT000040177_05;  HIT000011800;  HIT000322542_05;  HIT000424655_05;  HIT000267233_07;  HIT000492705_03;  HIT000429028_07; 
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 
Mini-G Locus map Locus map

 
TOP 1-8 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000035253_05
Accession number BC011447.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM alpha chain precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006111)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol HLA-DMA 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM alpha 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4373608- 4378080
Strand -
Gene structure 5 exons
 
TOP 1-8 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000040177_05
Accession number BC026279.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM alpha chain precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006111)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol HLA-DMA 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM alpha 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4373608- 4378040
Strand -
Gene structure 5 exons
 
TOP 1-8 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000011800
Accession number AK055186.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4388292- 4393495
Strand -
Gene structure 2 exons
 
TOP 1-8 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000322542_05
Accession number X62744.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM alpha chain; MHC class II antigen DMA; Really interesting new gene 6 protein; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P28067)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMA 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM alpha 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4373606- 4378065
Strand -
Gene structure 5 exons
 
TOP 1-8 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000424655_05
Accession number AK291858.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM alpha chain precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006111)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol HLA-DMA 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM alpha 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4373607- 4378047
Strand -
Gene structure 5 exons
 
TOP 1-8 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000267233_07
Accession number CR450324.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition MHC class II, alpha chain, N-terminal domain containing protein.
Similarity category  Help Category: IPR domain containing protein(Category III).
InterPro domain (IPR001003) -containing protein.
Gene symbol/name HGNC symbol HLA-DMA 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM alpha 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4374262- 4378025
Strand -
Gene structure 4 exons
 
TOP 1-8 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000492705_03
Accession number AK298081.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Immunoglobulin C1-set domain containing protein.
Similarity category  Help Category: IPR domain containing protein(Category III).
InterPro domain (IPR003597) -containing protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4374626- 4378084
Strand -
Gene structure 2 exons
 
TOP 1-8 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000429028_07
Accession number AK310162.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to HLA class II histocompatibility antigen, DM alpha chain; MHC class II antigen DMA; Really interesting new gene 6 protein; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P28067)  [Identity/coverage = 100.0%/11.11%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4375379- 4378040
Strand -
Gene structure 3 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Internal acceptor site;  Internal donor site; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000035253_05;  Splicing isoformHIT000429028_07;  Splicing isoformHIT000011800; 
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0057992
Representative H-Inv ID Representative H-Inv IDHIT000035253_05
Accession number BC011447.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM alpha chain precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006111)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID HIF0000002
Gene family/group name Major histocompatibility complex (MHC).
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol HLA-DMA 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM alpha 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000056817
No. of interaction 15
Interaction partner(s) HIP000030139;  HIP000034689;  HIP000035368;  HIP000040680;  HIP000057536;  HIP000066804;  HIP000081259;  HIP000091500;  HIP000097588;  HIP000098608;  HIP000098839;  HIP000133013;  HIP000176001;  HIP000192853;  HIP000357913; 
BIND NA
DIP 180013E; 
MINT MINT-7995228; 
HPRD 00428;  00950;  01548;  02890;  03891;  04816;  06121;  06640;  07315;  17165; 
IntAct EBI-2255044;  EBI-3930165;  EBI-3932865;  EBI-2564373;  EBI-2845858;  EBI-3048562;  EBI-3930796;  EBI-2827068;  EBI-3646827;  EBI-3046676;  EBI-3044058; 
Database links RefSeq NA
Ensembl ENST00000486785;  ENST00000419041;  ENST00000456800;  ENST00000433630;  ENST00000466043;  ENST00000469705;  ENST00000458066;  ENST00000452615;  ENST00000422196;  ENST00000418042;  ENST00000441375;  ENST00000420299;  ENST00000485999;  ENST00000487786;  ENST00000461059;  ENST00000464392;  ENST00000416297;  ENST00000489879;  ENST00000481354;  ENST00000479292;  ENST00000475844;  ENST00000383228;  ENST00000472934;  ENST00000434337;  ENST00000495512;  ENST00000453490;  ENST00000466370;  ENST00000477208;  ENST00000465136;  ENST00000487750;  ENST00000419231;  ENST00000479386;  ENST00000426176;  ENST00000472833;  ENST00000437285;  ENST00000467732;  ENST00000452330;  ENST00000466040;  ENST00000470656;  ENST00000477541;  ENST00000383227;  ENST00000480785;  ENST00000412394;  ENST00000489001;  ENST00000450601;  ENST00000452434;  ENST00000451148;  ENST00000491978;  ENST00000432991;  ENST00000473725;  ENST00000451753;  ENST00000479036;  ENST00000454298;  ENST00000490859;  ENST00000472231;  ENST00000493659;  ENST00000462225;  ENST00000475284;  ENST00000460128;  ENST00000383230;  ENST00000452703;  ENST00000422832;  ENST00000477135;  ENST00000475627;  ENST00000440717;  ENST00000457285;  ENST00000466446;  ENST00000469049;  ENST00000494230;  ENST00000498081;  ENST00000435503;  ENST00000416806; 
Entrez Gene Entrez Gene ID:3108; 
KEGG GENES KEGG GENES(3108); 
GeneCard GeneCardHLA-DMA;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Related H-InvDB links G-integraG-integra;  PPI viewerPPI view;  H-DBASH-DBAS;  Gene family;  Similarity Search ToolSimilarity search tool;  TACTTACT;