H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Inv cluster ID: HIX0057992 Created date: 26-Mar-2013 Last modified: 26-Mar-2013
Definition: HLA class II histocompatibility antigen, DM alpha chain precursor.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0057992
Genomic location  G-integra Help Chromosome 6_mann_hap4
Location NA
Position 4373601- 4395720
Strand -
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl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
Entrez Gene Entrez Gene ID:3108
KEGG GENES KEGG GENES(3108)
GeneCard GeneCardHLA-DMA*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000035253_05HIT000040177_05HIT000011800HIT000322542_05HIT000424655_05HIT000267233_07HIT000492705_03HIT000429028_07
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-8 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000035253_05
Accession number BC011447.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM alpha chain precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006111)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol HLA-DMA 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM alpha 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4373608- 4378080
Strand -
Gene structure 5 exons
 
TOP 1-8 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000040177_05
Accession number BC026279.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM alpha chain precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006111)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol HLA-DMA 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM alpha 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4373608- 4378040
Strand -
Gene structure 5 exons
 
TOP 1-8 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000011800
Accession number AK055186.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4388292- 4393495
Strand -
Gene structure 2 exons
 
TOP 1-8 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000322542_05
Accession number X62744.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM alpha chain; MHC class II antigen DMA; Really interesting new gene 6 protein; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P28067)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMA 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM alpha 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4373606- 4378065
Strand -
Gene structure 5 exons
 
TOP 1-8 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000424655_05
Accession number AK291858.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM alpha chain precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006111)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol HLA-DMA 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM alpha 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4373607- 4378047
Strand -
Gene structure 5 exons
 
TOP 1-8 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000267233_07
Accession number CR450324.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition MHC class II, alpha chain, N-terminal domain containing protein.
Similarity category  Help Category: IPR domain containing protein(Category III).
InterPro domain (IPR001003) -containing protein.
Gene symbol/name HGNC symbol HLA-DMA 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM alpha 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4374262- 4378025
Strand -
Gene structure 4 exons
 
TOP 1-8 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000492705_03
Accession number AK298081.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Immunoglobulin C1-set domain containing protein.
Similarity category  Help Category: IPR domain containing protein(Category III).
InterPro domain (IPR003597) -containing protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4374626- 4378084
Strand -
Gene structure 2 exons
 
TOP 1-8 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000429028_07
Accession number AK310162.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to HLA class II histocompatibility antigen, DM alpha chain; MHC class II antigen DMA; Really interesting new gene 6 protein; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P28067)  [Identity/coverage = 100.0%/11.11%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4375379- 4378040
Strand -
Gene structure 3 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Internal acceptor site;  Internal donor site; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000035253_05Splicing isoformHIT000429028_07Splicing isoformHIT000011800
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0057992
Representative H-Inv ID Representative H-Inv IDHIT000035253_05
Accession number BC011447.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM alpha chain precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006111)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID HIF0000002
Gene family/group name Major histocompatibility complex (MHC).
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol HLA-DMA 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM alpha 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000056817
No. of interaction 11
Interaction partner(s) HIP000028573HIP000029856HIP000060318HIP000063225HIP000065689HIP000084528HIP000096509HIP000110189HIP000110202HIP000110206HIP000154333
BIND 82786; 
DIP 11036E; 
MINT MINT-24982; 
HPRD 00825;  00831;  00833;  00837;  01872;  06969;  08349;  09004; 
IntAct EBI-3865829;  EBI-3865808;  EBI-3865585;  EBI-3865540;  EBI-3865399;  EBI-3865469;  EBI-3865790;  EBI-3865694;  EBI-3865647;  EBI-3865675;  EBI-3865769;  EBI-3865715;  EBI-3865750;  EBI-3866101;  EBI-3866112;  EBI-3918240;  EBI-3916010;  EBI-3866128;  EBI-3866158; 
Database links RefSeq NA
Ensembl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
Entrez Gene Entrez Gene ID:3108
KEGG GENES KEGG GENES(3108)
GeneCard GeneCardHLA-DMA*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene family Similarity Search ToolSimilarity search tool TACTTACT