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H-Inv cluster ID: HIX0057992 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0057992
Genomic location  G-integra Help Chromosome 6_mann_hap4
Location NA
Position 4359617- 4395720
Strand -
Antisense cluster ID(s) HIX0166665 overlap at CDSs (all)
HIX0207705 overlap at CDSs (all)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:3109Entrez Gene ID:3108
KEGG GENES KEGG GENES(3109)
GeneCard GeneCardHLA-DMB*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000218295_03HIT000040244_03HIT000035253_05HIT000040177_05HIT000011800HIT000326693_03HIT000322542_05HIT000424655_05HIT000267233_07HIT000332058_03HIT000267103_04HIT000495641_02HIT000490496_03HIT000409794_04HIT000409795_04HIT000094002HIT000329512_06HIT000492705_03HIT000409796_04HIT000429028_07
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-10 11-20 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000218295_03
Accession number U15085.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P28068)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4359624- 4366028
Strand -
Gene structure 6 exons
 
TOP 1-10 11-20 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000040244_03
Accession number BC027175.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P28068)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4359626- 4365939
Strand -
Gene structure 6 exons
 
TOP 1-10 11-20 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000035253_05
Accession number BC011447.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM alpha chain; MHC class II antigen DMA; Really interesting new gene 6 protein; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P28067)  [Identity/coverage = 99.234%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4373608- 4378080
Strand -
Gene structure 5 exons
 
TOP 1-10 11-20 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000040177_05
Accession number BC026279.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM alpha chain; MHC class II antigen DMA; Really interesting new gene 6 protein; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P28067)  [Identity/coverage = 99.234%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4373608- 4378040
Strand -
Gene structure 5 exons
 
TOP 1-10 11-20 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000011800
Accession number AK055186.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4388292- 4393495
Strand -
Gene structure 2 exons
 
TOP 1-10 11-20 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000326693_03
Accession number Z23139.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P28068)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4359626- 4365964
Strand -
Gene structure 6 exons
 
TOP 1-10 11-20 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000322542_05
Accession number X62744.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM alpha chain; MHC class II antigen DMA; Really interesting new gene 6 protein; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P28067)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4373606- 4378065
Strand -
Gene structure 5 exons
 
TOP 1-10 11-20 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000424655_05
Accession number AK291858.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM alpha chain; MHC class II antigen DMA; Really interesting new gene 6 protein; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P28067)  [Identity/coverage = 99.234%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4373607- 4378047
Strand -
Gene structure 5 exons
 
TOP 1-10 11-20 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000267233_07
Accession number CR450324.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM alpha chain; MHC class II antigen DMA; Really interesting new gene 6 protein; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P28067)  [Identity/coverage = 99.234%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4374262- 4378025
Strand -
Gene structure 4 exons
 
TOP 1-10 11-20 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000332058_03
Accession number AY645722.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P28068)  [Identity/coverage = 98.859%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4359626- 4366028
Strand -
Gene structure 6 exons
 
TOP 1-10 11-20 LAST 
Locus member number 11
H-Inv ID Transcript viewHIT000267103_04
Accession number CR407606.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P28068)  [Identity/coverage = 99.62%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4360329- 4365795
Strand -
Gene structure 5 exons
 
TOP 1-10 11-20 LAST 
Locus member number 12
H-Inv ID Transcript viewHIT000495641_02
Accession number AK301017.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P28068)  [Identity/coverage = 97.386%/58.17%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4361786- 4365989
Strand -
Gene structure 3 exons
 
TOP 1-10 11-20 LAST 
Locus member number 13
H-Inv ID Transcript viewHIT000490496_03
Accession number AK295872.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P28068)  [Identity/coverage = 98.558%/79.09%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4361997- 4366014
Strand -
Gene structure 3 exons
 
TOP 1-10 11-20 LAST 
Locus member number 14
H-Inv ID Transcript viewHIT000409794_04
Accession number AB362554.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P28068)  [Identity/coverage = 97.143%/26.62%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4359947- 4362248
Strand -
Gene structure 3 exons
 
TOP 1-10 11-20 LAST 
Locus member number 15
H-Inv ID Transcript viewHIT000409795_04
Accession number AB362555.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P28068)  [Identity/coverage = 100.0%/32.32%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4359947- 4362248
Strand -
Gene structure 3 exons
 
TOP 1-10 11-20 LAST 
Locus member number 16
H-Inv ID Transcript viewHIT000094002
Accession number BC035650.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P28068)  [Identity/coverage = 100.0%/20.91%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4359620- 4361874
Strand -
Gene structure 3 exons
 
TOP 1-10 11-20 LAST 
Locus member number 17
H-Inv ID Transcript viewHIT000329512_06
Accession number AB209577.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Class II histocompatibility antigen, M beta 1 chain; H2-M beta 1 chain; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P35737)  [Identity/coverage = 78.947%/36.4%] to Mus musculus (Mouse). protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4359621- 4365972
Strand -
Gene structure 2 exons
 
TOP 1-10 11-20 LAST 
Locus member number 18
H-Inv ID Transcript viewHIT000492705_03
Accession number AK298081.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to HLA class II histocompatibility antigen, DM alpha chain precursor.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_006111)  [Identity/coverage = 100.0%/32.57%] to Homo sapiens protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4374626- 4378084
Strand -
Gene structure 2 exons
 
TOP 1-10 11-20 LAST 
Locus member number 19
H-Inv ID Transcript viewHIT000409796_04
Accession number AB362556.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P28068)  [Identity/coverage = 83.784%/14.07%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature NA
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4359947- 4362248
Strand -
Gene structure 2 exons
 
TOP 1-10 11-20 LAST 
Locus member number 20
H-Inv ID Transcript viewHIT000429028_07
Accession number AK310162.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to HLA class II histocompatibility antigen, DM alpha chain; MHC class II antigen DMA; Really interesting new gene 6 protein; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P28067)  [Identity/coverage = 100.0%/11.11%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6_mann_hap4
Location NA
Position 4375379- 4378040
Strand -
Gene structure 3 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Internal acceptor site;  Internal donor site; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000322542_05Splicing isoformHIT000329512_06Splicing isoformHIT000490496_03Splicing isoformHIT000429028_07Splicing isoformHIT000218295_03Splicing isoformHIT000011800
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0057992
Representative H-Inv ID Representative H-Inv IDHIT000218295_03
Accession number U15085.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DM beta chain; MHC class II antigen DMB; Really interesting new gene 7 protein; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P28068)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol HLA-DMB 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DM beta 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000065691
No. of interaction 45
Interaction partner(s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
BIND 82786; 
DIP 11036E; 
MINT MINT-24982; 
HPRD 00825;  00830;  00833;  01121;  08368;  09004;  09123;  16028; 
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:3109Entrez Gene ID:3108
KEGG GENES KEGG GENES(3109)
GeneCard GeneCardHLA-DMB*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT