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H-Inv cluster ID: HIX0056783 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Similar to Uncharacterized protein;

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Gene structure

H-Inv cluster ID		HIX0056783
Genomic location	Chromosome	1
	Location	1p36.21
	Position	12884468- 12891264
	Strand	-
Antisense cluster ID(s)		NA
Database links	RefSeq	NM_001146344;
	Ensembl	ENST00000331684;  ENST00000437584;  ENST00000535591;
	Entrez Gene	Entrez Gene ID:440560;
	KEGG GENES	KEGG GENES(440560);
	GeneCard	PRAMEF11;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Cluster member H-Inv ID(s)		HIT000502838;  HIT000250071;
Additional cluster member candidate(s)		NA
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

 

TOP 1-2 LAST

Cluster member (s)

Locus member number		1
H-Inv ID		HIT000502838
Accession number		BC144426.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Uncharacterized protein;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (E2R975)  [Identity/coverage = 55.319%/65.85%] to Canis familiaris (Dog) (Canis lupus familiaris). protein.
Gene symbol/name	HGNC symbol	PRAMEF11
	HGNC aliases	NA
	HGNC name	PRAME family member 11
Transcript feature		Representative transcript;
Genomic location	Chromosome	1
	Location	1p36.21
	Position	12884618- 12891263
	Strand	-
Gene structure		4 exons

 

TOP 1-2 LAST

Locus member number		2
H-Inv ID		HIT000250071
Accession number		AL049680.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Pseudogene candidate;
Definition		Pseudogene candidate (Uncharacterized protein;)
Similarity category		Category: Pseudogene candidate(Category VII).
		Pseudogene candidate.
Gene symbol/name	HGNC symbol	PRAMEF11
	HGNC aliases	NA
	HGNC name	PRAME family member 11
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1p36.21
	Position	12884805- 12891264
	Strand	-
Gene structure		4 exons

Gene function information

H-Inv cluster ID		HIX0056783
Representative H-Inv ID		HIT000502838
Accession number		BC144426.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Uncharacterized protein;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (E2R975)  [Identity/coverage = 55.319%/65.85%] to Canis familiaris (Dog) (Canis lupus familiaris). protein.
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	PRAMEF11
	HGNC aliases	NA
	HGNC name	PRAME family member 11
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000259404
	No. of interaction	16
	Interaction partner(s)	HIP000006616;  HIP000022280;  HIP000022280;  HIP000027204;  HIP000027204;  HIP000033334;  HIP000033334;  HIP000056081;  HIP000058053;  HIP000070563;  HIP000072192;  HIP000092109;  HIP000258575;  HIP000349364;  HIP000349364;  HIP000436453;
	BIND	NA
	DIP	103378E;  114300E;  175922E;  75172E;
	MINT	MINT-4299164;  MINT-4299261;  MINT-8204054;  MINT-8204105;
	HPRD	01491;  01751;  01928;  04745;  07262;  10986;  11869;  16142;
	IntAct	EBI-1773521;  EBI-1773687;  EBI-1266406;  EBI-1266363;  EBI-1805236;  EBI-1802422;  EBI-1773734;  EBI-2479833;  EBI-2479253;  EBI-1808895;  EBI-1266140;  EBI-2479316;  EBI-1190609;  EBI-1068449;  EBI-1060621;  EBI-2479884;  EBI-996739;  EBI-2556012;
Database links	RefSeq	NM_001146344;
	Ensembl	ENST00000331684;  ENST00000437584;  ENST00000535591;
	Entrez Gene	Entrez Gene ID:440560;
	KEGG GENES	KEGG GENES(440560);
	GeneCard	PRAMEF11;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Related H-InvDB links		G-integra;  PPI view;  H-DBAS;  Gene family;  Similarity search tool;  TACT;

Disease/pathology information

Last modified:20-Apr-2012

Disease relation			Disease name:NA
Related information in OMIM			OMIM ID:NA Title:NA
Co-localized orphan diseases			OMIM ID:  115665;  116600;  155600;  600975;  605225;  605606;  606788;  606852;  606928;  607317;  607671;  608543;  608553;  608995;  609918;  610320;  612367;  612596;
Disease related mutation			NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA)	Gene name	Entrez Gene ID:(440560);
	Disease	Entrez Gene ID:(440560);
	Gene function	Entrez Gene ID:(440560);
	Substance	Entrez Gene ID:(440560);
Related H-InvDB links			DiseaseInfo Viewer;  LEGENDA;