H-InvDB x AHG DB
Locus view
H-InvDB_8.3 released on March 26, 2013.
Search by for Advanced Search
Home Quick guide Navi BLAST Site map Download Contact us Help
cDNA viewTranscript view Protein view Protein view G-integraG-integra DiseaseInfo ViewerDiseaseInfo Viewer H-ANGELH-ANGEL EvolaEvola PPI viewerPPI view Gene Family/GroupGene Family/Group Hyperlink managemnet system (All databases)Hyperlink MS
H-Inv cluster ID: HIX0033647 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Voltage-dependent calcium channel subunit alpha-2/delta-1.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0033647
Genomic location  G-integra Help Chromosome 7
Location 7q21.11
Position 81579418- 82073032
Strand -
Antisense cluster ID(s) NA
Database links RefSeq NM_000722; 
Ensembl ENST00000475237;  ENST00000535308;  ENST00000492734;  ENST00000461275;  ENST00000466806;  ENST00000284088;  ENST00000486539;  ENST00000443883;  ENST00000469297;  ENST00000356860;  ENST00000356253;  ENST00000484706;  ENST00000464354;  ENST00000423588; 
Entrez Gene Entrez Gene ID:781; 
KEGG GENES KEGG GENES(781); 
GeneCard GeneCardCACNA2D1;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Cluster member H-Inv ID(s) HIT000387756;  HIT000387758;  HIT000196371;  HIT000099318;  HIT000494462; 
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 
Mini-G Locus map Locus map

 
TOP 1-5 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000387756
Accession number BC117468.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Voltage-dependent calcium channel subunit alpha-2/delta-1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_000713)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol CACNA2D1 
HGNC aliases NA
HGNC name calcium channel, voltage-dependent, alpha 2/delta subunit 1 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 7
Location 7q21.11
Position 81579649- 82072806
Strand -
Gene structure 38 exons
 
TOP 1-5 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000387758
Accession number BC117470.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Voltage-dependent calcium channel subunit alpha-2/delta-1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_000713)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol CACNA2D1 
HGNC aliases NA
HGNC name calcium channel, voltage-dependent, alpha 2/delta subunit 1 
Transcript feature NA
Genomic location  G-integra Chromosome 7
Location 7q21.11
Position 81579649- 82072806
Strand -
Gene structure 38 exons
 
TOP 1-5 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000196371
Accession number M76559.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Voltage-dependent calcium channel alpha-2 delta subunit; Fragment;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (B7TB07)  [Identity/coverage = 100.0%/100.0%] to Sus scrofa (Pig). protein.
Gene symbol/name HGNC symbol CACNA2D1 
HGNC aliases NA
HGNC name calcium channel, voltage-dependent, alpha 2/delta subunit 1 
Transcript feature NA
Genomic location  G-integra Chromosome 7
Location 7q21.11
Position 81579418- 82072805
Strand -
Gene structure 38 exons
 
TOP 1-5 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000099318
Accession number BC051339.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Voltage-dependent calcium channel subunit alpha-2/delta-1; Voltage-gated calcium channel subunit alpha-2/delta-1; Contains: Voltage-dependent calcium channel subunit alpha-2-1; Contains: Voltage-dependent calcium channel subunit delta-1; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P54289)  [Identity/coverage = 100.0%/26.56%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol CACNA2D1 
HGNC aliases NA
HGNC name calcium channel, voltage-dependent, alpha 2/delta subunit 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 7
Location 7q21.11
Position 81679652- 82073032
Strand -
Gene structure 11 exons
 
TOP 1-5 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000494462
Accession number AK299838.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Voltage-dependent calcium channel alpha-2 delta subunit; Fragment;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q52SK8)  [Identity/coverage = 100.0%/100.0%] to Sus scrofa (Pig). protein.
Gene symbol/name HGNC symbol CACNA2D1 
HGNC aliases NA
HGNC name calcium channel, voltage-dependent, alpha 2/delta subunit 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 7
Location 7q21.11
Position 81579557- 81600405
Strand -
Gene structure 11 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000494462;  Splicing isoformHIT000387756;  Splicing isoformHIT000099318; 
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0033647
Representative H-Inv ID Representative H-Inv IDHIT000387756
Accession number BC117468.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Voltage-dependent calcium channel subunit alpha-2/delta-1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_000713)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID HIF0000011
Gene family/group name Putative Peptidase S1 and S6, chymotrypsin/Hap (IPR001254).
Evidence motif (InterPro) ID IPR001254
Gene symbol/name HGNC symbol CACNA2D1 
HGNC aliases NA
HGNC name calcium channel, voltage-dependent, alpha 2/delta subunit 1 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000022222
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NM_000722; 
Ensembl ENST00000475237;  ENST00000535308;  ENST00000492734;  ENST00000461275;  ENST00000466806;  ENST00000284088;  ENST00000486539;  ENST00000443883;  ENST00000469297;  ENST00000356860;  ENST00000356253;  ENST00000484706;  ENST00000464354;  ENST00000423588; 
Entrez Gene Entrez Gene ID:781; 
KEGG GENES KEGG GENES(781); 
GeneCard GeneCardCACNA2D1;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Related H-InvDB links G-integraG-integra;  PPI viewerPPI view;  H-DBASH-DBAS;  Putative Peptidase S1 and S6, chymotrypsin/Hap (IPR001254). Similarity Search ToolSimilarity search tool;  TACTTACT; 
Gene expression information   H-ANGEL DNAProbeLocator Last modified:20-Apr-2012
Tissue-specific expression  H-ANGEL muscle/heart; 
Probe
information DNAProbeLocator		 AceGene NA
Affymetrix
GeneChip		 HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 NA
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 NA
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator; 

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  129900;  145290;  603511;  608027;  608658;  612223; 
Disease related mutation NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(781); 
Disease Entrez Gene ID:(781); 
Gene function Entrez Gene ID:(781); 
Substance Entrez Gene ID:(781); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA;