H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Inv cluster ID: HIX0033594 Created date: 26-Mar-2013 Last modified: 26-Mar-2013
Definition: Vacuolar protein sorting-associated protein 37D.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0033594
Genomic location  G-integra Help Chromosome 7
Location 7q11.23
Position 73062395- 73095589
Strand +
Antisense cluster ID(s) HIX0006752 overlap at CDSs (all)
Database links RefSeq NM_001077621
Ensembl ENST00000451519ENST00000324941
Entrez Gene Entrez Gene ID:155382
KEGG GENES KEGG GENES(155382)
GeneCard GeneCardVPS37D*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000084251HIT000040860HIT000275874HIT000273421HIT000261540pHIT000013141
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-6 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000084251
Accession number AY081952.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vacuolar protein sorting-associated protein 37D.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001071089)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol VPS37D 
HGNC aliases "Williams Beuren syndrome chromosome region 24", "vacuolar protein sorting 37D (yeast)" 
HGNC name vacuolar protein sorting 37 homolog D (S. cerevisiae) 
Transcript feature Representative H-Inv IDRepresentative transcript; 
Genomic location  G-integra Chromosome 7
Location 7q11.23
Position 73082174- 73086440
Strand +
Gene structure 4 exons
 
TOP 1-6 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000040860
Accession number BC029730.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vacuolar protein sorting-associated protein 37D.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001071089)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol VPS37D 
HGNC aliases "Williams Beuren syndrome chromosome region 24", "vacuolar protein sorting 37D (yeast)" 
HGNC name vacuolar protein sorting 37 homolog D (S. cerevisiae) 
Transcript feature NA
Genomic location  G-integra Chromosome 7
Location 7q11.23
Position 73082174- 73086440
Strand +
Gene structure 4 exons
 
TOP 1-6 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000275874
Accession number CR596679.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vacuolar protein sorting-associated protein 37D.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001071089)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol VPS37D 
HGNC aliases "Williams Beuren syndrome chromosome region 24", "vacuolar protein sorting 37D (yeast)" 
HGNC name vacuolar protein sorting 37 homolog D (S. cerevisiae) 
Transcript feature NA
Genomic location  G-integra Chromosome 7
Location 7q11.23
Position 73082203- 73086426
Strand +
Gene structure 4 exons
 
TOP 1-6 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000273421
Accession number CR594226.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vacuolar protein sorting-associated protein 37D.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001071089)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol VPS37D 
HGNC aliases "Williams Beuren syndrome chromosome region 24", "vacuolar protein sorting 37D (yeast)" 
HGNC name vacuolar protein sorting 37 homolog D (S. cerevisiae) 
Transcript feature NA
Genomic location  G-integra Chromosome 7
Location 7q11.23
Position 73082178- 73086373
Strand +
Gene structure 4 exons
 
TOP 1-6 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000261540
Accession number BC064621.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Vacuolar protein sorting-associated protein 37D; ESCRT-I complex subunit VPS37D; Williams-Beuren syndrome chromosomal region 24 protein;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q86XT2)  [Identity/coverage = 100.0%/94.82%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VPS37D 
HGNC aliases "Williams Beuren syndrome chromosome region 24", "vacuolar protein sorting 37D (yeast)" 
HGNC name vacuolar protein sorting 37 homolog D (S. cerevisiae) 
Transcript feature NA
Genomic location  G-integra Chromosome 7
Location 7q11.23
Position 73082327- 73086437
Strand +
Gene structure 4 exons
 
TOP 1-6 LAST 
Locus member number 6
H-Inv ID Transcript viewpHIT000013141
Accession number NA
CAGE tag ID H04BA06E1705;  H04BA12E2307;  H04BA18A0510;  H04BA19N1803;  H04BA23G0607; 
EST ID NA
Coding potential Protein coding; 
Definition Similar to Vacuolar protein sorting-associated protein 37D; ESCRT-I complex subunit VPS37D; Williams-Beuren syndrome chromosomal region 24 protein;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q86XT2)  [Identity/coverage = 87.615%/96.41%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 7
Location 7q11.23
Position 73062395- 73095589
Strand +
Gene structure 5 exons

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0033594
Representative H-Inv ID Representative H-Inv IDHIT000084251
Accession number AY081952.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vacuolar protein sorting-associated protein 37D.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001071089)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID HIF0001901
Gene family/group name Modifier of rudimentary, Modr (IPR009851).
Evidence motif (InterPro) ID IPR009851
Gene symbol/name HGNC symbol VPS37D 
HGNC aliases "Williams Beuren syndrome chromosome region 24", "vacuolar protein sorting 37D (yeast)" 
HGNC name vacuolar protein sorting 37 homolog D (S. cerevisiae) 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000116842
No. of interaction 4
Interaction partner(s) HIP000036824HIP000059863HIP000116842HIP000146565
BIND NA
DIP NA
MINT MINT-6173476; 
HPRD 03229;  05085;  12569;  19106; 
IntAct NA
Database links RefSeq NM_001077621
Ensembl ENST00000451519ENST00000324941
Entrez Gene Entrez Gene ID:155382
KEGG GENES KEGG GENES(155382)
GeneCard GeneCardVPS37D*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS;  Modifier of rudimentary, Modr (IPR009851). Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:26-Mar-2013
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 235569_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 235569_at; 
HG-U133_Plus_2 235569_at; 
HG-U95 81931_at; 
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E 81931_at; 
HG-U95Av2 NA
HuEx-1_0 3007877;  3007878;  3007879;  3007881;  3007883;  3007884;  3056210; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P409417; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P409417; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:26-Mar-2013
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  105800129900145290603511608027608658
Disease related mutation NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(155382); 
Disease Entrez Gene ID:(155382); 
Gene function Entrez Gene ID:(155382); 
Substance Entrez Gene ID:(155382); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA