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H-Inv cluster ID: HIX0032911 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Histone H2A type 1-A.

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Gene structure

H-Inv cluster ID		HIX0032911
Genomic location	Chromosome	6
	Location	6p22.2
	Position	25726291- 25726790
	Strand	-
Antisense cluster ID(s)		NA
Database links	RefSeq	NM_170745;
	Ensembl	ENST00000297012;
	Entrez Gene	Entrez Gene ID:221613;
	KEGG GENES	KEGG GENES(221613);
	GeneCard	HIST1H2AA;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Cluster member H-Inv ID(s)		HIT000260279;  HIT000452492;
Additional cluster member candidate(s)		NA
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

 

TOP 1-2 LAST

Cluster member (s)

Locus member number		1
H-Inv ID		HIT000260279
Accession number		BC062211.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Histone H2A type 1-A.
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (NP_734466)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	HIST1H2AA
	HGNC aliases	"H2A histone family, member R", "histone 1, H2aa"
	HGNC name	histone cluster 1, H2aa
Transcript feature		Representative transcript;
Genomic location	Chromosome	6
	Location	6p22.2
	Position	25726322- 25726790
	Strand	-
Gene structure		1 exons

 

TOP 1-2 LAST

Locus member number		2
H-Inv ID		HIT000452492
Accession number		DQ585961.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Non-protein-coding;
Definition		Non-protein-coding transcript, uncharacterized transcript.
Similarity category		Category: Non-protein coding transcript.
		NA
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	6
	Location	6p22.2
	Position	25726748- 25726777
	Strand	-
Gene structure		1 exons

Gene function information

H-Inv cluster ID		HIX0032911
Representative H-Inv ID		HIT000260279
Accession number		BC062211.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Histone H2A type 1-A.
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (NP_734466)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group	H-Inv gene family/group ID	HIF0000002
	Gene family/group name	Major histocompatibility complex (MHC).
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	HIST1H2AA
	HGNC aliases	"H2A histone family, member R", "histone 1, H2aa"
	HGNC name	histone cluster 1, H2aa
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000098416
	No. of interaction	2
	Interaction partner(s)	HIP000051540;  HIP000122347;
	BIND	NA
	DIP	20876E;  31189E;
	MINT	NA
	HPRD	NA
	IntAct	EBI-249439;  EBI-205952;
Database links	RefSeq	NM_170745;
	Ensembl	ENST00000297012;
	Entrez Gene	Entrez Gene ID:221613;
	KEGG GENES	KEGG GENES(221613);
	GeneCard	HIST1H2AA;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Related H-InvDB links		G-integra;  PPI view;  H-DBAS;  Gene family;  Similarity search tool;  TACT;

Gene expression information

Last modified:20-Apr-2012

Tissue-specific expression			NA
Probe information	AceGene		AGhsB260415;
	Affymetrix GeneChip	HG-Focus	NA
		HG-U133	NA
		HG-U133A	NA
		HG-U133A_2	NA
		HG-U133B	NA
		HG-U133_Plus_2	NA
		HG-U95	NA
		HG-U95A	NA
		HG-U95B	NA
		HG-U95C	NA
		HG-U95D	NA
		HG-U95E	NA
		HG-U95Av2	NA
		HuEx-1_0	2946053;  2946054;  2946055;
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	A_23_P355439;
		Whole Human Genome Oligo Microarray:PGID247	A_23_P355439;
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;

Disease/pathology information

Last modified:20-Apr-2012

Disease relation			Disease name:NA
Related information in OMIM			OMIM ID:NA Title:NA
Co-localized orphan diseases			OMIM ID:  122550;  143400;  271250;  600511;  604519;  608244;  610212;  612368;
Disease related mutation			NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA)	Gene name	Entrez Gene ID:(221613);
	Disease	Entrez Gene ID:(221613);
	Gene function	Entrez Gene ID:(221613);
	Substance	Entrez Gene ID:(221613);
Related H-InvDB links			DiseaseInfo Viewer;  LEGENDA;