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H-InvDB_8.3 released on March 26, 2013.
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H-Inv cluster ID: HIX0028716 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Vascular cell adhesion protein 1 isoform a precursor.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0028716
Genomic location  G-integra Help Chromosome 1
Location 1p21.2
Position 101185196- 101204601
Strand +
Antisense cluster ID(s) NA
Database links RefSeq NM_080682; 
Ensembl ENST00000347652;  ENST00000370115;  ENST00000370119;  ENST00000294728; 
Entrez Gene Entrez Gene ID:7412; 
KEGG GENES KEGG GENES(7412); 
GeneCard GeneCardVCAM1;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Cluster member H-Inv ID(s) HIT000263047;  HIT000037916;  HIT000266092;  HIT000195933;  HIT000296791;  HIT000424529;  HIT000321817;  HIT000195358;  HIT000331046;  HIT000491316;  HIT000282446;  HIT000306491; 
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 
Mini-G Locus map Locus map

 
TOP 1-10 11-12 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000263047
Accession number BC068490.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vascular cell adhesion protein 1 isoform a precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001069)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol VCAM1 
HGNC aliases NA
HGNC name vascular cell adhesion molecule 1 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 1
Location 1p21.2
Position 101185298- 101204594
Strand +
Gene structure 9 exons
 
TOP 1-10 11-12 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000037916
Accession number BC017276.2
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vascular cell adhesion protein 1 isoform a precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001069)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol VCAM1 
HGNC aliases NA
HGNC name vascular cell adhesion molecule 1 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1p21.2
Position 101185316- 101204600
Strand +
Gene structure 9 exons
 
TOP 1-10 11-12 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000266092
Accession number BC085003.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vascular cell adhesion protein 1 isoform a precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001069)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol VCAM1 
HGNC aliases NA
HGNC name vascular cell adhesion molecule 1 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1p21.2
Position 101185316- 101204600
Strand +
Gene structure 9 exons
 
TOP 1-10 11-12 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000195933
Accession number M60335.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vascular cell adhesion protein 1 isoform a precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001069)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol VCAM1 
HGNC aliases NA
HGNC name vascular cell adhesion molecule 1 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1p21.2
Position 101185318- 101204598
Strand +
Gene structure 9 exons
 
TOP 1-10 11-12 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000296791
Accession number CR617596.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vascular cell adhesion protein 1 isoform a precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001069)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol VCAM1 
HGNC aliases NA
HGNC name vascular cell adhesion molecule 1 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1p21.2
Position 101185313- 101204563
Strand +
Gene structure 9 exons
 
TOP 1-10 11-12 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000424529
Accession number AK291732.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vascular cell adhesion protein 1 isoform a precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001069)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol VCAM1 
HGNC aliases NA
HGNC name vascular cell adhesion molecule 1 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1p21.2
Position 101185298- 101203931
Strand +
Gene structure 9 exons
 
TOP 1-10 11-12 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000321817
Accession number X53051.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vascular cell adhesion protein 1 isoform a precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001069)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol VCAM1 
HGNC aliases NA
HGNC name vascular cell adhesion molecule 1 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1p21.2
Position 101185417- 101203839
Strand +
Gene structure 9 exons
 
TOP 1-10 11-12 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000195358
Accession number M30257.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vascular cell adhesion protein 1 isoform b precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_542413)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol VCAM1 
HGNC aliases NA
HGNC name vascular cell adhesion molecule 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 1
Location 1p21.2
Position 101185311- 101204598
Strand +
Gene structure 8 exons
 
TOP 1-10 11-12 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000331046
Accession number AK223266.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vascular cell adhesion molecule 1 isoform a variant; Fragment;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q53FL7)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VCAM1 
HGNC aliases NA
HGNC name vascular cell adhesion molecule 1 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1p21.2
Position 101185298- 101204598
Strand +
Gene structure 9 exons
 
TOP 1-10 11-12 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000491316
Accession number AK296692.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vascular cell adhesion protein 1; V-CAM 1; VCAM-1; INCAM-100; AltName: CD_antigen=CD106; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P19320)  [Identity/coverage = 99.852%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VCAM1 
HGNC aliases NA
HGNC name vascular cell adhesion molecule 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 1
Location 1p21.2
Position 101185298- 101204169
Strand +
Gene structure 9 exons
 
TOP 1-10 11-12 LAST 
Locus member number 11
H-Inv ID Transcript viewHIT000282446
Accession number CR603251.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Vascular cell adhesion protein 1; V-CAM 1; VCAM-1; INCAM-100; AltName: CD_antigen=CD106; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P19320)  [Identity/coverage = 100.0%/45.6%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VCAM1 
HGNC aliases NA
HGNC name vascular cell adhesion molecule 1 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1p21.2
Position 101196754- 101204601
Strand +
Gene structure 4 exons
 
TOP 1-10 11-12 LAST 
Locus member number 12
H-Inv ID Transcript viewHIT000306491
Accession number CR749464.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Vascular cell adhesion protein 1; V-CAM 1; VCAM-1; INCAM-100; AltName: CD_antigen=CD106; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P19320)  [Identity/coverage = 100.0%/7.17%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VCAM1 
HGNC aliases NA
HGNC name vascular cell adhesion molecule 1 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1p21.2
Position 101200731- 101204594
Strand +
Gene structure 1 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms Internal AS; 
Position of alternative splicing isoforms Cassette;  Internal donor site; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000195358;  Splicing isoformHIT000263047;  Splicing isoformHIT000491316; 
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0028716
Representative H-Inv ID Representative H-Inv IDHIT000263047
Accession number BC068490.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vascular cell adhesion protein 1 isoform a precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001069)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol VCAM1 
HGNC aliases NA
HGNC name vascular cell adhesion molecule 1 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000083765
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NM_080682; 
Ensembl ENST00000347652;  ENST00000370115;  ENST00000370119;  ENST00000294728; 
Entrez Gene Entrez Gene ID:7412; 
KEGG GENES KEGG GENES(7412); 
GeneCard GeneCardVCAM1;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Related H-InvDB links G-integraG-integra;  PPI viewerPPI view;  H-DBASH-DBAS;  Gene familyGene family;  Similarity Search ToolSimilarity search tool;  TACTTACT; 
Gene expression information   H-ANGEL DNAProbeLocator Last modified:20-Apr-2012
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator		 AceGene AGhsA250912; 
Affymetrix
GeneChip		 HG-Focus 203868_s_at; 
HG-U133 203868_s_at; 
HG-U133A 203868_s_at; 
HG-U133A_2 203868_s_at; 
HG-U133B NA
HG-U133_Plus_2 203868_s_at; 
HG-U95 41433_at;  583_s_at; 
HG-U95A 41433_at;  583_s_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2349005;  2349006;  2349007;  2349008;  2349009;  2349011;  2349012;  2349017;  2349018;  2349019;  2349020;  2349021;  2349022;  2349024;  2349025;  2349026; 
HuGeneFL M30257_s_at; 
Agilent Human 1A Oligo Microarray:PGID215 A_23_P34345; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P34345; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator; 

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  600193;  605606;  606215;  606788;  606852;  607346;  608543;  608653;  609727;  609822;  609913;  611107; 
Disease related mutation NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(7412); 
Disease Entrez Gene ID:(7412); 
Gene function Entrez Gene ID:(7412); 
Substance Entrez Gene ID:(7412); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA;