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H-Inv cluster ID: HIX0028498 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Similar to Uncharacterized protein;

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Gene structure

H-Inv cluster ID		HIX0028498
Genomic location	Chromosome	1
	Location	1p21.2
	Position	101003693- 101007583
	Strand	+
Antisense cluster ID(s)		NA
Database links	RefSeq	NM_022049;
	Ensembl	ENST00000315033;
	Entrez Gene	Entrez Gene ID:54112;
	KEGG GENES	KEGG GENES(54112);
	GeneCard	GPR88;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Cluster member H-Inv ID(s)		HIT000059328;  HIT000094605;  HIT000384878;  HIT000386040;  HIT000066939;
Additional cluster member candidate(s)		NA
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

 

TOP 1-5 LAST

Cluster member (s)

Locus member number		1
H-Inv ID		HIT000059328
Accession number		AB042410.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Uncharacterized protein;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (E1BHN7)  [Identity/coverage = 96.629%/100.0%] to Bos taurus (Bovine). protein.
Gene symbol/name	HGNC symbol	GPR88
	HGNC aliases	"G-protein coupled receptor 88", "G protein coupled receptor 88"
	HGNC name	G protein-coupled receptor 88
Transcript feature		Representative transcript;
Genomic location	Chromosome	1
	Location	1p21.2
	Position	101003693- 101007571
	Strand	+
Gene structure		2 exons

 

TOP 1-5 LAST

Locus member number		2
H-Inv ID		HIT000094605
Accession number		BC036775.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Uncharacterized protein;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (E1BHN7)  [Identity/coverage = 97.465%/99.72%] to Bos taurus (Bovine). protein.
Gene symbol/name	HGNC symbol	GPR88
	HGNC aliases	"G-protein coupled receptor 88", "G protein coupled receptor 88"
	HGNC name	G protein-coupled receptor 88
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1p21.2
	Position	101003728- 101005592
	Strand	+
Gene structure		2 exons

 

TOP 1-5 LAST

Locus member number		3
H-Inv ID		HIT000384878
Accession number		AK225748.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Uncharacterized protein;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (E1BHN7)  [Identity/coverage = 96.91%/100.0%] to Bos taurus (Bovine). protein.
Gene symbol/name	HGNC symbol	GPR88
	HGNC aliases	"G-protein coupled receptor 88", "G protein coupled receptor 88"
	HGNC name	G protein-coupled receptor 88
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1p21.2
	Position	101004457- 101005755
	Strand	+
Gene structure		1 exons

 

TOP 1-5 LAST

Locus member number		4
H-Inv ID		HIT000386040
Accession number		AY336999.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Uncharacterized protein;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (E1BHN7)  [Identity/coverage = 96.91%/100.0%] to Bos taurus (Bovine). protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1p21.2
	Position	101004523- 101005677
	Strand	+
Gene structure		1 exons

 

TOP 1-5 LAST

Locus member number		5
H-Inv ID		HIT000066939
Accession number		AF086060.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Hypothetical short protein.
Similarity category		Category: Hypothetical short protein(Category VI).
		Hypothetical short protein.
Gene symbol/name	HGNC symbol	GPR88
	HGNC aliases	"G-protein coupled receptor 88", "G protein coupled receptor 88"
	HGNC name	G protein-coupled receptor 88
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1p21.2
	Position	101006932- 101007583
	Strand	+
Gene structure		1 exons

Gene function information

H-Inv cluster ID		HIX0028498
Representative H-Inv ID		HIT000059328
Accession number		AB042410.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Uncharacterized protein;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (E1BHN7)  [Identity/coverage = 96.629%/100.0%] to Bos taurus (Bovine). protein.
Gene family/group	H-Inv gene family/group ID	HIF0000006
	Gene family/group name	Putative 7TM GPCR, rhodopsin-like (IPR000276).
	Evidence motif (InterPro) ID	IPR000276
Gene symbol/name	HGNC symbol	GPR88
	HGNC aliases	"G-protein coupled receptor 88", "G protein coupled receptor 88"
	HGNC name	G protein-coupled receptor 88
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000107631
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NM_022049;
	Ensembl	ENST00000315033;
	Entrez Gene	Entrez Gene ID:54112;
	KEGG GENES	KEGG GENES(54112);
	GeneCard	GPR88;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Related H-InvDB links		G-integra;  PPI view;  H-DBAS;  Putative 7TM GPCR, rhodopsin-like (IPR000276). Similarity search tool;  TACT;

Gene expression information

Last modified:20-Apr-2012

Tissue-specific expression			NA
Probe information	AceGene		AGhsA260710;  AGhsB251102;
	Affymetrix GeneChip	HG-Focus	220313_at;
		HG-U133	220313_at;
		HG-U133A	220313_at;
		HG-U133A_2	220313_at;
		HG-U133B	NA
		HG-U133_Plus_2	220313_at;
		HG-U95	51309_at;
		HG-U95A	NA
		HG-U95B	51309_at;
		HG-U95C	NA
		HG-U95D	NA
		HG-U95E	NA
		HG-U95Av2	NA
		HuEx-1_0	2348963;  2348964;  2348965;  2348966;  2348967;  2348968;  2348969;  2348970;  2348971;  2348972;  2348973;  2348974;  2348975;  2425342;
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	A_23_P149745;
		Whole Human Genome Oligo Microarray:PGID247	A_23_P149749;
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;

Disease/pathology information

Last modified:20-Apr-2012

Disease relation			Disease name:NA
Related information in OMIM			OMIM ID:NA Title:NA
Co-localized orphan diseases			OMIM ID:  600193;  605606;  606215;  606788;  606852;  607346;  608543;  608653;  609727;  609822;  609913;  611107;
Disease related mutation			NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA)	Gene name	Entrez Gene ID:(54112);
	Disease	Entrez Gene ID:(54112);
	Gene function	Entrez Gene ID:(54112);
	Substance	Entrez Gene ID:(54112);
Related H-InvDB links			DiseaseInfo Viewer;  LEGENDA;