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H-InvDB_8.3 released on March 26, 2013.
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H-Inv cluster ID: HIX0027959 Created date: 26-Mar-2013 Last modified: 26-Mar-2013
Definition: Similar to MHC class II antigen;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0027959
Genomic location  G-integra Help Chromosome 6
Location 6p21.32
Position 32595956- 32614839
Strand +
Antisense cluster ID(s) NA
Database links RefSeq NM_002122
Ensembl ENST00000495840ENST00000395363ENST00000422863ENST00000343139ENST00000486548ENST00000496318ENST00000460633ENST00000482745ENST00000395364ENST00000374949
Entrez Gene Entrez Gene ID:3117
KEGG GENES KEGG GENES(3117)
GeneCard GeneCardHLA-DQA1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000099434HIT000050082HIT000046294HIT000265198HIT000320864HIT000195620HIT000329563HIT000432841HIT000221378HIT000194727HIT000193128HIT000193129HIT000193127HIT000193821HIT000193131HIT000193130HIT000194598HIT000194599HIT000217531HIT000195900HIT000081391HIT000081390HIT000081367HIT000081392HIT000081368HIT000081369HIT000081373HIT000081375HIT000081374HIT000081357HIT000081356HIT000081358HIT000081398HIT000081400HIT000081362HIT000081399HIT000193902HIT000193904HIT000193903_05
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-10 11-20 21-30 31-39 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000099434
Accession number BC051832.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to MHC class II antigen;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q5Y7C9)  [Identity/coverage = 100.0%/89.41%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32605204- 32611038
Strand +
Gene structure 6 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000050082
Accession number AK130811.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition MHC class II HLA-DQ-alpha chain; Fragment;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q30066)  [Identity/coverage = 98.678%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32605183- 32611037
Strand +
Gene structure 5 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000046294
Accession number AK126421.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_002113)  [Identity/coverage = 76.316%/14.9%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32604954- 32607008
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000265198
Accession number BC073977.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition MHC class II antigen;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q5Y7A8)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32605202- 32611038
Strand +
Gene structure 5 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000320864
Accession number X00452.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_002113)  [Identity/coverage = 99.608%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32605214- 32611035
Strand +
Gene structure 5 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000195620
Accession number M34996.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Cell surface glycoprotein; Precursor; Fragment;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q29782)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32605272- 32611035
Strand +
Gene structure 5 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000329563
Accession number AB209628.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_002113)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32605208- 32614839
Strand +
Gene structure 4 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000432841
Accession number AK313975.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_002113)  [Identity/coverage = 99.216%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32605183- 32610541
Strand +
Gene structure 4 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000221378
Accession number U77589.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition MHC class II HLA-DQ-alpha chain;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (O19760)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32605236- 32610541
Strand +
Gene structure 4 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000194727
Accession number M20431.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition MHC class II HLA-DQ-alpha chain; Fragment;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q30066)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32609086- 32611037
Strand +
Gene structure 4 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 11
H-Inv ID Transcript viewHIT000193128
Accession number L34083.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition MHC class II HLA-DQ-alpha chain; Fragment;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q30066)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32609086- 32610523
Strand +
Gene structure 3 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 12
H-Inv ID Transcript viewHIT000193129
Accession number L34084.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition MHC class II HLA-DQ-alpha chain; Fragment;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q30066)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32609086- 32610523
Strand +
Gene structure 3 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 13
H-Inv ID Transcript viewHIT000193127
Accession number L34082.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to MHC class II antigen;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q5Y7G1)  [Identity/coverage = 99.559%/89.02%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32609086- 32610523
Strand +
Gene structure 3 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 14
H-Inv ID Transcript viewHIT000193821
Accession number L42625.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to MHC class II antigen;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q5Y7G1)  [Identity/coverage = 100.0%/89.02%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32609086- 32610523
Strand +
Gene structure 3 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 15
H-Inv ID Transcript viewHIT000193131
Accession number L34086.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to MHC class II antigen;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q5Y7C9)  [Identity/coverage = 100.0%/89.02%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32609086- 32610523
Strand +
Gene structure 3 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 16
H-Inv ID Transcript viewHIT000193130
Accession number L34085.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to MHC class II antigen;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q5Y7A8)  [Identity/coverage = 100.0%/89.02%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32609086- 32610523
Strand +
Gene structure 3 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 17
H-Inv ID Transcript viewHIT000194598
Accession number M17846.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_002113)  [Identity/coverage = 100.0%/53.73%] to Homo sapiens protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32609770- 32611019
Strand +
Gene structure 3 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 18
H-Inv ID Transcript viewHIT000194599
Accession number M17847.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA-DQA2 protein; Fragment;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q29995)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32609770- 32611019
Strand +
Gene structure 3 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 19
H-Inv ID Transcript viewHIT000217531
Accession number U03889.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32606791- 32607327
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 20
H-Inv ID Transcript viewHIT000195900
Accession number M59802.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition HLA DR-beta-I; Fragment;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q30062)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32609086- 32609331
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 21
H-Inv ID Transcript viewHIT000081391
Accession number AF533930.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32610497- 32611429
Strand +
Gene structure 2 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 22
H-Inv ID Transcript viewHIT000081390
Accession number AF533929.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32610497- 32611429
Strand +
Gene structure 2 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 23
H-Inv ID Transcript viewHIT000081367
Accession number AF533906.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32610497- 32611429
Strand +
Gene structure 2 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 24
H-Inv ID Transcript viewHIT000081392
Accession number AF533931.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32610497- 32611429
Strand +
Gene structure 2 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 25
H-Inv ID Transcript viewHIT000081368
Accession number AF533907.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32610497- 32611429
Strand +
Gene structure 2 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 26
H-Inv ID Transcript viewHIT000081369
Accession number AF533908.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32610497- 32611429
Strand +
Gene structure 2 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 27
H-Inv ID Transcript viewHIT000081373
Accession number AF533912.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32610497- 32611047
Strand +
Gene structure 2 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 28
H-Inv ID Transcript viewHIT000081375
Accession number AF533914.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32610497- 32611047
Strand +
Gene structure 2 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 29
H-Inv ID Transcript viewHIT000081374
Accession number AF533913.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32610497- 32611047
Strand +
Gene structure 2 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 30
H-Inv ID Transcript viewHIT000081357
Accession number AF533896.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32610497- 32611429
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 31
H-Inv ID Transcript viewHIT000081356
Accession number AF533895.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32610497- 32611429
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 32
H-Inv ID Transcript viewHIT000081358
Accession number AF533897.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32610497- 32611429
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 33
H-Inv ID Transcript viewHIT000081398
Accession number AF533937.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32610497- 32611047
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 34
H-Inv ID Transcript viewHIT000081400
Accession number AF533939.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32610497- 32611047
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 35
H-Inv ID Transcript viewHIT000081362
Accession number AF533901.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32610497- 32611047
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 36
H-Inv ID Transcript viewHIT000081399
Accession number AF533938.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32610497- 32611042
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 37
H-Inv ID Transcript viewHIT000193902
Accession number L46875.1
CAGE tag ID NA
EST ID NA
Coding potential Non-protein-coding; 
Definition Non-protein-coding transcript, putative ncRNA.
Similarity category  Help Category: Non-protein coding transcript.
NA
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32605236- 32605317
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 38
H-Inv ID Transcript viewHIT000193904
Accession number L46877.1
CAGE tag ID NA
EST ID NA
Coding potential Non-protein-coding; 
Definition Non-protein-coding transcript, uncharacterized transcript.
Similarity category  Help Category: Non-protein coding transcript.
NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32605236- 32605317
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-30 31-39 LAST 
Locus member number 39
H-Inv ID Transcript viewHIT000193903_05
Accession number L46876.1
CAGE tag ID NA
EST ID NA
Coding potential Non-protein-coding; 
Definition Non-protein-coding transcript, uncharacterized transcript.
Similarity category  Help Category: Non-protein coding transcript.
NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.32
Position 32605236- 32605317
Strand +
Gene structure 1 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette;  Retained intron; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000265198Splicing isoformHIT000329563Splicing isoformHIT000099434
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0027959
Representative H-Inv ID Representative H-Inv IDHIT000099434
Accession number BC051832.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to MHC class II antigen;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q5Y7C9)  [Identity/coverage = 100.0%/89.41%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID HIF0000002
Gene family/group name Major histocompatibility complex (MHC).
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol HLA-DQA1 
HGNC aliases NA
HGNC name major histocompatibility complex, class II, DQ alpha 1 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000071529
No. of interaction 7
Interaction partner(s) HIP000034894HIP000053465HIP000058916HIP000063225HIP000070464HIP000104285HIP000104882
BIND 157823; 
DIP NA
MINT NA
HPRD 00102;  00825;  02557;  04927;  05054;  05125;  17975; 
IntAct NA
Database links RefSeq NM_002122
Ensembl ENST00000495840ENST00000395363ENST00000422863ENST00000343139ENST00000486548ENST00000496318ENST00000460633ENST00000482745ENST00000395364ENST00000374949
Entrez Gene Entrez Gene ID:3117
KEGG GENES KEGG GENES(3117)
GeneCard GeneCardHLA-DQA1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene family Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:26-Mar-2013
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 213831_at; 
HG-U133A 213831_at; 
HG-U133A_2 213831_at; 
HG-U133B NA
HG-U133_Plus_2 213831_at; 
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2903226;  2903273; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_24_P196827; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:26-Mar-2013
Disease relation Disease name: {Celiac disease, susceptibility to} (212750); 
Related information in OMIM OMIM ID:  146880;  Title: MAJOR HISTOCOMPATIBILITY COMPLEX, CLASS II, DQ ALPHA-1
Co-localized orphan diseases OMIM ID:  108800122550137100143400146850150270153600167250179450271250272370601086603209603282604519606766607017607085608244608645608710608816610212611185612671
Disease related mutation MutationView:  146880
JRE-1.4.0 or later is required.Download JRE at Sun's web site.
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(3117); 
Disease Entrez Gene ID:(3117); 
Gene function Entrez Gene ID:(3117); 
Substance Entrez Gene ID:(3117); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA