H-InvDB_9.0 released on May 27, 2015.
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Definition*
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H-Inv cluster ID:
HIX0027959
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Select format
Flat file
XML file
Gene structure
H-Inv cluster ID
HIX0027959
Genomic location
Chromosome
6
Location
6p21.32
Position
32595956- 32614839
Strand
+
Antisense cluster ID(s)
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:3117
;
KEGG GENES
KEGG GENES(3117)
;
GeneCard
HLA-DQA1
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Cluster member H-Inv ID(s)
HIT000099434
;
HIT000050082
;
HIT000046294
;
HIT000265198
;
HIT000320864
;
HIT000195620
;
HIT000432841
;
HIT000221378
;
HIT000194727
;
HIT000329563
;
HIT000193128
;
HIT000193129
;
HIT000193127
;
HIT000193821
;
HIT000193131
;
HIT000193130
;
HIT000194598
;
HIT000194599
;
HIT000081367
;
HIT000081368
;
HIT000081369
;
HIT000081373
;
HIT000081375
;
HIT000081374
;
HIT000081357
;
HIT000081356
;
HIT000081358
;
HIT000081398
;
HIT000081400
;
HIT000081362
;
HIT000081399
;
HIT000195900
;
HIT000081391
;
HIT000081390
;
HIT000081392
;
HIT000217531
;
HIT000193902
;
HIT000193904
;
HIT000193903_05
;
Additional cluster member candidate(s)
NA
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome multiple alignment
;
ORF multiple alignment
;
TOP
1-10
11-20
21-30
31-39
LAST
Cluster member (s)
Locus member number
1
H-Inv ID
HIT000099434
Accession number
BC051832.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 98.684%/89.41%] to Homo sapiens protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
Representative transcript;
Splicing isoform
Genomic location
Chromosome
6
Location
6p21.32
Position
32605204- 32611038
Strand
+
Gene structure
6 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
2
H-Inv ID
HIT000050082
Accession number
AK130811.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 98.431%/100.0%] to Homo sapiens protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32605183- 32611037
Strand
+
Gene structure
5 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
3
H-Inv ID
HIT000046294
Accession number
AK126421.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Conserved hypothetical protein.
Similarity category
Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32604954- 32607008
Strand
+
Gene structure
1 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
4
H-Inv ID
HIT000265198
Accession number
BC073977.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 97.638%/100.0%] to Homo sapiens protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
Splicing isoform
Genomic location
Chromosome
6
Location
6p21.32
Position
32605202- 32611038
Strand
+
Gene structure
5 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
5
H-Inv ID
HIT000320864
Accession number
X00452.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 99.608%/100.0%] to Homo sapiens protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32605214- 32611035
Strand
+
Gene structure
5 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
6
H-Inv ID
HIT000195620
Accession number
M34996.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 98.354%/95.29%] to Homo sapiens protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32605272- 32611035
Strand
+
Gene structure
5 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
7
H-Inv ID
HIT000432841
Accession number
AK313975.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 99.216%/100.0%] to Homo sapiens protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32605183- 32610541
Strand
+
Gene structure
4 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
8
H-Inv ID
HIT000221378
Accession number
U77589.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 97.255%/100.0%] to Homo sapiens protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32605236- 32610541
Strand
+
Gene structure
4 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
9
H-Inv ID
HIT000194727
Accession number
M20431.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 100.0%/91.37%] to Homo sapiens protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32609086- 32611037
Strand
+
Gene structure
4 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
10
H-Inv ID
HIT000329563
Accession number
AB209628.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
Splicing isoform
Genomic location
Chromosome
6
Location
6p21.32
Position
32605208- 32614839
Strand
+
Gene structure
3 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
11
H-Inv ID
HIT000193128
Accession number
L34083.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 100.0%/89.02%] to Homo sapiens protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32609086- 32610523
Strand
+
Gene structure
3 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
12
H-Inv ID
HIT000193129
Accession number
L34084.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 100.0%/89.02%] to Homo sapiens protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32609086- 32610523
Strand
+
Gene structure
3 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
13
H-Inv ID
HIT000193127
Accession number
L34082.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 99.119%/89.02%] to Homo sapiens protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32609086- 32610523
Strand
+
Gene structure
3 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
14
H-Inv ID
HIT000193821
Accession number
L42625.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 98.678%/89.02%] to Homo sapiens protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32609086- 32610523
Strand
+
Gene structure
3 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
15
H-Inv ID
HIT000193131
Accession number
L34086.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 97.797%/89.02%] to Homo sapiens protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32609086- 32610523
Strand
+
Gene structure
3 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
16
H-Inv ID
HIT000193130
Accession number
L34085.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 97.797%/89.02%] to Homo sapiens protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32609086- 32610523
Strand
+
Gene structure
3 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
17
H-Inv ID
HIT000194598
Accession number
M17846.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 100.0%/53.73%] to Homo sapiens protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32609770- 32611019
Strand
+
Gene structure
3 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
18
H-Inv ID
HIT000194599
Accession number
M17847.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 97.81%/53.73%] to Homo sapiens protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32609770- 32611019
Strand
+
Gene structure
3 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
19
H-Inv ID
HIT000081367
Accession number
AF533906.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Hypothetical protein.
Similarity category
Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32610497- 32611429
Strand
+
Gene structure
2 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
20
H-Inv ID
HIT000081368
Accession number
AF533907.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Hypothetical protein.
Similarity category
Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32610497- 32611429
Strand
+
Gene structure
2 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
21
H-Inv ID
HIT000081369
Accession number
AF533908.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Hypothetical protein.
Similarity category
Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32610497- 32611429
Strand
+
Gene structure
2 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
22
H-Inv ID
HIT000081373
Accession number
AF533912.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Hypothetical protein.
Similarity category
Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32610497- 32611047
Strand
+
Gene structure
2 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
23
H-Inv ID
HIT000081375
Accession number
AF533914.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Hypothetical protein.
Similarity category
Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32610497- 32611047
Strand
+
Gene structure
2 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
24
H-Inv ID
HIT000081374
Accession number
AF533913.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Hypothetical protein.
Similarity category
Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32610497- 32611047
Strand
+
Gene structure
2 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
25
H-Inv ID
HIT000081357
Accession number
AF533896.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Hypothetical protein.
Similarity category
Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32610497- 32611429
Strand
+
Gene structure
1 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
26
H-Inv ID
HIT000081356
Accession number
AF533895.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Hypothetical protein.
Similarity category
Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32610497- 32611429
Strand
+
Gene structure
1 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
27
H-Inv ID
HIT000081358
Accession number
AF533897.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Hypothetical protein.
Similarity category
Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32610497- 32611429
Strand
+
Gene structure
1 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
28
H-Inv ID
HIT000081398
Accession number
AF533937.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Hypothetical protein.
Similarity category
Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32610497- 32611047
Strand
+
Gene structure
1 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
29
H-Inv ID
HIT000081400
Accession number
AF533939.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Hypothetical protein.
Similarity category
Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32610497- 32611047
Strand
+
Gene structure
1 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
30
H-Inv ID
HIT000081362
Accession number
AF533901.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Hypothetical protein.
Similarity category
Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32610497- 32611047
Strand
+
Gene structure
1 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
31
H-Inv ID
HIT000081399
Accession number
AF533938.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Hypothetical protein.
Similarity category
Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32610497- 32611042
Strand
+
Gene structure
1 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
32
H-Inv ID
HIT000195900
Accession number
M59802.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 97.674%/33.73%] to Homo sapiens protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32609086- 32609331
Strand
+
Gene structure
1 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
33
H-Inv ID
HIT000081391
Accession number
AF533930.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Hypothetical short protein.
Similarity category
Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32610497- 32611429
Strand
+
Gene structure
2 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
34
H-Inv ID
HIT000081390
Accession number
AF533929.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Hypothetical short protein.
Similarity category
Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32610497- 32611429
Strand
+
Gene structure
2 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
35
H-Inv ID
HIT000081392
Accession number
AF533931.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Hypothetical short protein.
Similarity category
Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32610497- 32611429
Strand
+
Gene structure
2 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
36
H-Inv ID
HIT000217531
Accession number
U03889.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Hypothetical short protein.
Similarity category
Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32606791- 32607327
Strand
+
Gene structure
1 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
37
H-Inv ID
HIT000193902
Accession number
L46875.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Non-protein-coding;
Definition
Non-protein-coding transcript, putative ncRNA.
Similarity category
Category: Non-protein coding transcript.
NA
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32605236- 32605317
Strand
+
Gene structure
1 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
38
H-Inv ID
HIT000193904
Accession number
L46877.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Non-protein-coding;
Definition
Non-protein-coding transcript, uncharacterized transcript.
Similarity category
Category: Non-protein coding transcript.
NA
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32605236- 32605317
Strand
+
Gene structure
1 exons
TOP
1-10
11-20
21-30
31-39
LAST
Locus member number
39
H-Inv ID
HIT000193903_05
Accession number
L46876.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Non-protein-coding;
Definition
Non-protein-coding transcript, uncharacterized transcript.
Similarity category
Category: Non-protein coding transcript.
NA
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6p21.32
Position
32605236- 32605317
Strand
+
Gene structure
1 exons
Alternative splicing (AS) information
Pattern of alternative splicing isoforms
3' terminal AS; Internal AS;
Position of alternative splicing isoforms
Cassette; Retained intron;
Alternative splicing isoform H-Inv ID(s)
HIT000265198
;
HIT000329563
;
HIT000099434
;
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome multiple alignment
;
ORF multiple alignment
;
Gene function information
H-Inv cluster ID
HIX0027959
Representative H-Inv ID
HIT000099434
Accession number
BC051832.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_002113
) [Identity/coverage = 98.684%/89.41%] to Homo sapiens protein.
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
HLA-DQA1
HGNC aliases
NA
HGNC name
major histocompatibility complex, class II, DQ alpha 1
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000071529
No. of interaction
15
Interaction partner(s)
HIP000014859
;
HIP000021531
;
HIP000024661
;
HIP000024900
;
HIP000026110
;
HIP000026993
;
HIP000031224
;
HIP000031586
;
HIP000033044
;
HIP000037880
;
HIP000042120
;
HIP000059885
;
HIP000079212
;
HIP000094011
;
HIP000101663
;
BIND
157823;
DIP
NA
MINT
NA
HPRD
00102; 00825; 02557; 04927; 05054; 05125; 17975;
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:3117
;
KEGG GENES
KEGG GENES(3117)
;
GeneCard
HLA-DQA1
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Related H-InvDB links
G-integra
;
PPI view
;
H-DBAS
;
Gene family;
Similarity search tool
;
TACT
;
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
NA
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
213831_at;
HG-U133A
213831_at;
HG-U133A_2
213831_at;
HG-U133B
NA
HG-U133_Plus_2
213831_at;
HG-U95
NA
HG-U95A
NA
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2903226; 2903273;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
A_24_P196827;
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Disease/pathology information
Last modified:27-May-2015
Disease relation
Disease name: {Celiac disease, susceptibility to} (
212750
);
Related information in OMIM
OMIM ID:
146880
; Title: MAJOR HISTOCOMPATIBILITY COMPLEX, CLASS II, DQ ALPHA-1
Co-localized orphan diseases
NA
Disease related mutation
MutationView:
146880
;
JRE-1.4.0 or later is required.Download JRE at
Sun's web site.
Co-occurred words and phrases with this gene name in PubMed (LEGENDA)
Gene name
Entrez Gene ID:(3117);
Disease
Entrez Gene ID:(3117);
Gene function
Entrez Gene ID:(3117);
Substance
Entrez Gene ID:(3117);
Related H-InvDB links
DiseaseInfo Viewer
;
LEGENDA
;