H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0019573 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Extracellular serine/threonine protein kinase FAM20C; EC=2.7.11.1; Dentin matrix protein 4; DMP-4; Golgi-enriched fraction casein kinase; GEF-CK; Protein FAM20C; Precursor;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0019573
Genomic location  G-integra Help Chromosome 7
Location 7p22.3
Position 192969- 300740
Strand +
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:56975Entrez Gene ID:100132244
KEGG GENES KEGG GENES(56975)
GeneCard GeneCardFAM20C*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000052316HIT000026389HIT000011318HIT000026379HIT000045154HIT000009414HIT000660464HIT000243735HIT000266175HIT000262945HIT000087307
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-10 11-11 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000052316
Accession number BC040074.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Extracellular serine/threonine protein kinase FAM20C; EC=2.7.11.1; Dentin matrix protein 4; DMP-4; Golgi-enriched fraction casein kinase; GEF-CK; Protein FAM20C; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q8IXL6)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol FAM20C 
HGNC aliases NA
HGNC name family with sequence similarity 20, member C 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 7
Location 7p22.3
Position 193113- 300711
Strand +
Gene structure 10 exons
 
TOP 1-10 11-11 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000026389
Accession number AL390147.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Extracellular serine/threonine protein kinase FAM20C; EC=2.7.11.1; Dentin matrix protein 4; DMP-4; Golgi-enriched fraction casein kinase; GEF-CK; Protein FAM20C; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q8IXL6)  [Identity/coverage = 98.993%/51.03%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol FAM20C 
HGNC aliases NA
HGNC name family with sequence similarity 20, member C 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 7
Location 7p22.3
Position 285861- 300711
Strand +
Gene structure 7 exons
 
TOP 1-10 11-11 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000011318
Accession number AK054704.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Extracellular serine/threonine protein kinase FAM20C; EC=2.7.11.1; Dentin matrix protein 4; DMP-4; Golgi-enriched fraction casein kinase; GEF-CK; Protein FAM20C; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q8IXL6)  [Identity/coverage = 99.296%/48.63%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol FAM20C 
HGNC aliases NA
HGNC name family with sequence similarity 20, member C 
Transcript feature NA
Genomic location  G-integra Chromosome 7
Location 7p22.3
Position 286417- 300699
Strand +
Gene structure 7 exons
 
TOP 1-10 11-11 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000026379
Accession number AL390137.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Protein FAM20A; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q96MK3)  [Identity/coverage = 62.667%/14.05%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol FAM20C 
HGNC aliases NA
HGNC name family with sequence similarity 20, member C 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 7
Location 7p22.3
Position 296161- 297419
Strand +
Gene structure 2 exons
 
TOP 1-10 11-11 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000045154
Accession number AK125281.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Gene symbol/name HGNC symbol FAM20C 
HGNC aliases NA
HGNC name family with sequence similarity 20, member C 
Transcript feature NA
Genomic location  G-integra Chromosome 7
Location 7p22.3
Position 196698- 199621
Strand +
Gene structure 1 exons
 
TOP 1-10 11-11 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000009414
Accession number AK026140.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name HGNC symbol FAM20C 
HGNC aliases NA
HGNC name family with sequence similarity 20, member C 
Transcript feature NA
Genomic location  G-integra Chromosome 7
Location 7p22.3
Position 198636- 200680
Strand +
Gene structure 1 exons
 
TOP 1-10 11-11 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000660464
Accession number AB545605.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Extracellular serine/threonine protein kinase FAM20C; EC=2.7.11.1; Dentin matrix protein 4; DMP-4; Golgi-enriched fraction casein kinase; GEF-CK; Protein FAM20C; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q8IXL6)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol FAM20C 
HGNC aliases NA
HGNC name family with sequence similarity 20, member C 
Transcript feature NA
Genomic location  G-integra Chromosome 7
Location 7p22.3
Position 192969- 300711
Strand +
Gene structure 10 exons
 
TOP 1-10 11-11 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000243735
Accession number AF533706.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Extracellular serine/threonine protein kinase FAM20C; EC=2.7.11.1; Dentin matrix protein 4; DMP-4; Golgi-enriched fraction casein kinase; GEF-CK; Protein FAM20C; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q8IXL6)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol FAM20C 
HGNC aliases NA
HGNC name family with sequence similarity 20, member C 
Transcript feature NA
Genomic location  G-integra Chromosome 7
Location 7p22.3
Position 192969- 300268
Strand +
Gene structure 10 exons
 
TOP 1-10 11-11 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000266175
Accession number BC087853.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Extracellular serine/threonine protein kinase FAM20C; EC=2.7.11.1; Dentin matrix protein 4; DMP-4; Golgi-enriched fraction casein kinase; GEF-CK; Protein FAM20C; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q8IXL6)  [Identity/coverage = 99.656%/49.83%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol FAM20C 
HGNC aliases NA
HGNC name family with sequence similarity 20, member C 
Transcript feature NA
Genomic location  G-integra Chromosome 7
Location 7p22.3
Position 286396- 300709
Strand +
Gene structure 7 exons
 
TOP 1-10 11-11 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000262945
Accession number BC068086.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Gene symbol/name HGNC symbol FAM20C 
HGNC aliases NA
HGNC name family with sequence similarity 20, member C 
Transcript feature NA
Genomic location  G-integra Chromosome 7
Location 7p22.3
Position 196925- 197613
Strand +
Gene structure 1 exons
 
TOP 1-10 11-11 LAST 
Locus member number 11
H-Inv ID Transcript viewHIT000087307
Accession number BC009531.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol FAM20C 
HGNC aliases NA
HGNC name family with sequence similarity 20, member C 
Transcript feature NA
Genomic location  G-integra Chromosome 7
Location 7p22.3
Position 300129- 300711
Strand +
Gene structure 1 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms NA
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000026389Splicing isoformHIT000052316Splicing isoformHIT000026379
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0019573
Representative H-Inv ID Representative H-Inv IDHIT000052316
Accession number BC040074.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Extracellular serine/threonine protein kinase FAM20C; EC=2.7.11.1; Dentin matrix protein 4; DMP-4; Golgi-enriched fraction casein kinase; GEF-CK; Protein FAM20C; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q8IXL6)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol FAM20C 
HGNC aliases NA
HGNC name family with sequence similarity 20, member C 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000068697
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:56975Entrez Gene ID:100132244
KEGG GENES KEGG GENES(56975)
GeneCard GeneCardFAM20C*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsB260913; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 226722_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 226722_at; 
HG-U133_Plus_2 226722_at; 
HG-U95 72673_r_at;  72964_at;  90257_at; 
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E 72673_r_at;  72964_at;  90257_at; 
HG-U95Av2 NA
HuEx-1_0 2986728;  2986729;  2986730;  2986731;  2986732;  2986733;  3034890; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P250122; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P250122; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator