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H-InvDB_8.3 released on March 26, 2013.
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H-Inv cluster ID: HIX0012672 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Chromosome transmission fidelity protein 18 homolog.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0012672
Genomic location  G-integra Help Chromosome 16
Location 16p13.3
Position 838046- 848074
Strand +
Antisense cluster ID(s) NA
Database links RefSeq NM_022092; 
Ensembl ENST00000498439;  ENST00000262315;  ENST00000461268;  ENST00000426047;  ENST00000479976;  ENST00000493715;  ENST00000471202;  ENST00000464728;  ENST00000440239;  ENST00000484349;  ENST00000491530;  ENST00000317063;  ENST00000455171; 
Entrez Gene Entrez Gene ID:63922; 
KEGG GENES KEGG GENES(63922); 
GeneCard GeneCardCHTF18;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Cluster member H-Inv ID(s) HIT000038306;  HIT000048742;  HIT000007750;  HIT000086664;  HIT000086630;  HIT000428670;  HIT000488470; 
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 
Mini-G Locus map Locus map

 
TOP 1-7 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000038306
Accession number BC018184.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Chromosome transmission fidelity protein 18 homolog.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_071375)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol CHTF18 
HGNC aliases "chromosome 16 open reading frame 41" 
HGNC name CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 16
Location 16p13.3
Position 838647- 848073
Strand +
Gene structure 22 exons
 
TOP 1-7 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000048742
Accession number AK128869.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Chromosome transmission fidelity protein 18 homolog; hCTF18; CHL12;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q8WVB6)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol CHTF18 
HGNC aliases "chromosome 16 open reading frame 41" 
HGNC name CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 16
Location 16p13.3
Position 838622- 848063
Strand +
Gene structure 20 exons
 
TOP 1-7 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000007750
Accession number AK024476.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Chromosome transmission fidelity protein 18 homolog; hCTF18; CHL12;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q8WVB6)  [Identity/coverage = 100.0%/20.72%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol CHTF18 
HGNC aliases "chromosome 16 open reading frame 41" 
HGNC name CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 16
Location 16p13.3
Position 838635- 848072
Strand +
Gene structure 19 exons
 
TOP 1-7 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000086664
Accession number BC006437.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Chromosome transmission fidelity protein 18 homolog; hCTF18; CHL12;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q8WVB6)  [Identity/coverage = 99.897%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol CHTF18 
HGNC aliases "chromosome 16 open reading frame 41" 
HGNC name CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) 
Transcript feature NA
Genomic location  G-integra Chromosome 16
Location 16p13.3
Position 838646- 848073
Strand +
Gene structure 22 exons
 
TOP 1-7 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000086630
Accession number BC006278.2
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Chromosome transmission fidelity protein 18 homolog; hCTF18; CHL12;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q8WVB6)  [Identity/coverage = 99.692%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol CHTF18 
HGNC aliases "chromosome 16 open reading frame 41" 
HGNC name CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) 
Transcript feature NA
Genomic location  G-integra Chromosome 16
Location 16p13.3
Position 838655- 848073
Strand +
Gene structure 22 exons
 
TOP 1-7 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000428670
Accession number AK309804.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Protein CTF18 homolog.;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q96S08)  [Identity/coverage = 99.658%/49.41%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol CHTF18 
HGNC aliases "chromosome 16 open reading frame 41" 
HGNC name CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) 
Transcript feature NA
Genomic location  G-integra Chromosome 16
Location 16p13.3
Position 838625- 843190
Strand +
Gene structure 14 exons
 
TOP 1-7 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000488470
Accession number AK293846.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Protein CTF18 homolog.;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q96S08)  [Identity/coverage = 97.872%/27.79%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol CHTF18 
HGNC aliases "chromosome 16 open reading frame 41" 
HGNC name CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) 
Transcript feature NA
Genomic location  G-integra Chromosome 16
Location 16p13.3
Position 838624- 840805
Strand +
Gene structure 7 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms Internal AS; 
Position of alternative splicing isoforms Cassette;  Internal acceptor site;  Internal donor site;  Retained intron; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000048742;  Splicing isoformHIT000038306;  Splicing isoformHIT000007750; 
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0012672
Representative H-Inv ID Representative H-Inv IDHIT000038306
Accession number BC018184.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Chromosome transmission fidelity protein 18 homolog.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_071375)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol CHTF18 
HGNC aliases "chromosome 16 open reading frame 41" 
HGNC name CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000045222
No. of interaction 3
Interaction partner(s) HIP000014859;  HIP000031586;  HIP000097046; 
BIND NA
DIP NA
MINT MINT-63250;  MINT-74576;  MINT-74577;  MINT-74578;  MINT-74579;  MINT-74580;  MINT-74581; 
HPRD 00082;  04472;  11601; 
IntAct EBI-735854; 
Database links RefSeq NM_022092; 
Ensembl ENST00000498439;  ENST00000262315;  ENST00000461268;  ENST00000426047;  ENST00000479976;  ENST00000493715;  ENST00000471202;  ENST00000464728;  ENST00000440239;  ENST00000484349;  ENST00000491530;  ENST00000317063;  ENST00000455171; 
Entrez Gene Entrez Gene ID:63922; 
KEGG GENES KEGG GENES(63922); 
GeneCard GeneCardCHTF18;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Related H-InvDB links G-integraG-integra;  PPI viewerPPI view;  H-DBASH-DBAS;  Gene familyGene family;  Similarity Search ToolSimilarity search tool;  TACTTACT; 
Gene expression information   H-ANGEL DNAProbeLocator Last modified:20-Apr-2012
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator		 AceGene AGhsB110720; 
Affymetrix
GeneChip		 HG-Focus NA
HG-U133 226569_s_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 226569_s_at; 
HG-U133_Plus_2 226569_s_at; 
HG-U95 90566_at; 
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E 90566_at; 
HG-U95Av2 NA
HuEx-1_0 3643434;  3643435;  3643436;  3643438;  3643440;  3643441;  3643443;  3643444;  3643445;  3643447;  3643449;  3643451;  3643452;  3643453;  3643454;  3643456;  3643457;  3643459;  3643460;  3643463;  3643464;  3643465;  3643467;  3643468;  3643469;  3643470;  3643471;  3675446; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P354297; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P354297;  A_32_P44274; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator; 

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  156850;  605013;  605021;  606668;  607339;  608558;  608903;  610260; 
Disease related mutation NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(63922); 
Disease Entrez Gene ID:(63922); 
Gene function Entrez Gene ID:(63922); 
Substance Entrez Gene ID:(63922); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA;