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H-Inv cluster ID: HIX0012162 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Spectrin beta chain, brain 4; BSPECV; Beta-V spectrin; Spectrin, non-erythroid beta chain 4;

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Gene structure

H-Inv cluster ID		HIX0012162
Genomic location	Chromosome	15
	Location	15q15.1
	Position	42140344- 42188133
	Strand	-
Antisense cluster ID(s)		NA
Database links	RefSeq	NM_016642;
	Ensembl	ENST00000320955;  ENST00000309874;
	Entrez Gene	Entrez Gene ID:51332;
	KEGG GENES	KEGG GENES(51332);
	GeneCard	SPTBN5;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Cluster member H-Inv ID(s)		HIT000074689;  HIT000014238;
Additional cluster member candidate(s)		NA
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

 

TOP 1-2 LAST

Cluster member (s)

Locus member number		1
H-Inv ID		HIT000074689
Accession number		AF233523.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Spectrin beta chain, brain 4; BSPECV; Beta-V spectrin; Spectrin, non-erythroid beta chain 4;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (Q9NRC6)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	SPTBN5
	HGNC aliases	NA
	HGNC name	spectrin, beta, non-erythrocytic 5
Transcript feature		Representative transcript;
Genomic location	Chromosome	15
	Location	15q15.1
	Position	42140345- 42186275
	Strand	-
Gene structure		68 exons

 

TOP 1-2 LAST

Locus member number		2
H-Inv ID		HIT000014238
Accession number		AK057625.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Spectrin beta chain, brain 4; BSPECV; Beta-V spectrin; Spectrin, non-erythroid beta chain 4;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (Q9NRC6)  [Identity/coverage = 100.0%/3.51%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	15
	Location	15q15.1
	Position	42184991- 42188133
	Strand	-
Gene structure		2 exons

Gene function information

H-Inv cluster ID		HIX0012162
Representative H-Inv ID		HIT000074689
Accession number		AF233523.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Spectrin beta chain, brain 4; BSPECV; Beta-V spectrin; Spectrin, non-erythroid beta chain 4;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (Q9NRC6)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group	H-Inv gene family/group ID	HIF0000542
	Gene family/group name	Putative Calponin-like actin-binding (IPR001715).
	Evidence motif (InterPro) ID	IPR001715
Gene symbol/name	HGNC symbol	SPTBN5
	HGNC aliases	NA
	HGNC name	spectrin, beta, non-erythrocytic 5
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000027815
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NM_016642;
	Ensembl	ENST00000320955;  ENST00000309874;
	Entrez Gene	Entrez Gene ID:51332;
	KEGG GENES	KEGG GENES(51332);
	GeneCard	SPTBN5;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Related H-InvDB links		G-integra;  PPI view;  H-DBAS;  Putative Calponin-like actin-binding (IPR001715). Similarity search tool;  TACT;

Gene expression information

Last modified:20-Apr-2012

Tissue-specific expression			NA
Probe information	AceGene		AGhsA160901;
	Affymetrix GeneChip	HG-Focus	220067_at;
		HG-U133	220067_at;
		HG-U133A	220067_at;
		HG-U133A_2	220067_at;
		HG-U133B	NA
		HG-U133_Plus_2	220067_at;
		HG-U95	42570_at;  65371_s_at;  65372_at;
		HG-U95A	NA
		HG-U95B	42570_at;
		HG-U95C	65371_s_at;  65372_at;
		HG-U95D	NA
		HG-U95E	NA
		HG-U95Av2	NA
		HuEx-1_0	3590777;  3590781;  3620157;  3620159;  3620160;  3620161;  3620162;  3620163;  3620165;  3620167;  3620168;  3620169;  3620170;  3620171;  3620172;  3620174;  3620175;  3620176;  3620177;  3620178;  3620179;  3620180;  3620181;  3620182;  3620183;  3620184;  3620185;  3620186;  3620188;  3620189;  3620192;  3620193;  3620195;  3620196;  3620197;  3620200;  3620203;  3620204;  3620205;  3620206;  3620207;  3620208;  3620210;  3620211;  3620212;  3620214;  3620215;  3620216;  3620217;  3620218;  3620219;  3620220;  3620221;  3620222;  3620223;  3620224;  3620226;  3620227;  3620228;  3620230;  3620231;  3620232;  3620233;  3620234;  3620235;  3620237;  3620238;  3620239;  3620240;  3620241;  3620242;  3620243;  3620244;  3620245;  3620246;  3620247;  3620250;  3620251;  3620252;  3620253;  3620254;  3620255;  3620256;  3620257;  3620258;  3620259;  3620260;  3620261;
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	A_23_P152084;
		Whole Human Genome Oligo Microarray:PGID247	A_23_P152082;
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;

Disease/pathology information

Last modified:20-Apr-2012

Disease relation			Disease name:NA
Related information in OMIM			OMIM ID:NA Title:NA
Co-localized orphan diseases			OMIM ID:  122460;  214900;  601228;  602099;  604321;  604329;  605419;  605738;  608646;  609273;
Disease related mutation			NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA)	Gene name	Entrez Gene ID:(51332);
	Disease	Entrez Gene ID:(51332);
	Gene function	Entrez Gene ID:(51332);
	Substance	Entrez Gene ID:(51332);
Related H-InvDB links			DiseaseInfo Viewer;  LEGENDA;