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H-InvDB_8.3 released on March 26, 2013.
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H-Inv cluster ID: HIX0011450 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Tumor necrosis factor ligand superfamily member 13B isoform 1.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0011450
Genomic location  G-integra Help Chromosome 13
Location 13q33.3
Position 108903588- 108960832
Strand +
Antisense cluster ID(s) NA
Database links RefSeq NM_006573; 
Ensembl ENST00000542136;  ENST00000486502;  ENST00000430559;  ENST00000493765;  ENST00000375887;  ENST00000479435; 
Entrez Gene Entrez Gene ID:10673; 
KEGG GENES KEGG GENES(10673); 
GeneCard GeneCardTNFSF13B;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Cluster member H-Inv ID(s) HIT000038888;  HIT000252925;  HIT000072905;  HIT000071016;  HIT000070897;  HIT000069926;  HIT000084618;  HIT000268689;  HIT000071074;  HIT000251540;  HIT000428495;  HIT000084619;  HIT000084620;  HIT000084621;  HIT000650062; 
Additional cluster member candidate(s) DQ857727;  DQ857728; 
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 
Mini-G Locus map Locus map

 
TOP 1-10 11-15 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000038888
Accession number BC020674.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Tumor necrosis factor ligand superfamily member 13B isoform 1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006564)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol TNFSF13B 
HGNC aliases NA
HGNC name tumor necrosis factor (ligand) superfamily, member 13b 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 13
Location 13q33.3
Position 108922066- 108959357
Strand +
Gene structure 6 exons
 
TOP 1-10 11-15 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000252925
Accession number AY358881.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Tumor necrosis factor ligand superfamily member 13B isoform 1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006564)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol TNFSF13B 
HGNC aliases NA
HGNC name tumor necrosis factor (ligand) superfamily, member 13b 
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location 13q33.3
Position 108922075- 108959365
Strand +
Gene structure 6 exons
 
TOP 1-10 11-15 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000072905
Accession number AF186114.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Tumor necrosis factor ligand superfamily member 13B isoform 1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006564)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol TNFSF13B 
HGNC aliases NA
HGNC name tumor necrosis factor (ligand) superfamily, member 13b 
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location 13q33.3
Position 108922087- 108959365
Strand +
Gene structure 6 exons
 
TOP 1-10 11-15 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000071016
Accession number AF134715.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Tumor necrosis factor ligand superfamily member 13B isoform 1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006564)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol TNFSF13B 
HGNC aliases NA
HGNC name tumor necrosis factor (ligand) superfamily, member 13b 
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location 13q33.3
Position 108922100- 108959365
Strand +
Gene structure 6 exons
 
TOP 1-10 11-15 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000070897
Accession number AF132600.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Tumor necrosis factor ligand superfamily member 13B isoform 1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006564)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol TNFSF13B 
HGNC aliases NA
HGNC name tumor necrosis factor (ligand) superfamily, member 13b 
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location 13q33.3
Position 108922108- 108959365
Strand +
Gene structure 6 exons
 
TOP 1-10 11-15 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000069926
Accession number AF116456.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Tumor necrosis factor ligand superfamily member 13B isoform 1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006564)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol TNFSF13B 
HGNC aliases NA
HGNC name tumor necrosis factor (ligand) superfamily, member 13b 
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location 13q33.3
Position 108922127- 108959362
Strand +
Gene structure 6 exons
 
TOP 1-10 11-15 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000084618
Accession number AY129225.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Tumor necrosis factor ligand superfamily member 13B isoform 1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006564)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol TNFSF13B 
HGNC aliases NA
HGNC name tumor necrosis factor (ligand) superfamily, member 13b 
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location 13q33.3
Position 108922244- 108959286
Strand +
Gene structure 6 exons
 
TOP 1-10 11-15 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000268689
Accession number CR541818.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Tumor necrosis factor ligand superfamily member 13B isoform 1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006564)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol TNFSF13B 
HGNC aliases NA
HGNC name tumor necrosis factor (ligand) superfamily, member 13b 
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location 13q33.3
Position 108922244- 108959286
Strand +
Gene structure 6 exons
 
TOP 1-10 11-15 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000071074
Accession number AF136293.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Tumor necrosis factor ligand superfamily member 13B isoform 1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006564)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol TNFSF13B 
HGNC aliases NA
HGNC name tumor necrosis factor (ligand) superfamily, member 13b 
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location 13q33.3
Position 108922244- 108959286
Strand +
Gene structure 6 exons
 
TOP 1-10 11-15 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000251540
Accession number AY302751.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Tumor necrosis factor ligand superfamily member 13B isoform 2.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001139117)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol TNFSF13B 
HGNC aliases NA
HGNC name tumor necrosis factor (ligand) superfamily, member 13b 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 13
Location 13q33.3
Position 108922244- 108959286
Strand +
Gene structure 5 exons
 
TOP 1-10 11-15 LAST 
Locus member number 11
H-Inv ID Transcript viewHIT000428495
Accession number AK309629.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Tumor necrosis factor ligand superfamily member 13B; B lymphocyte stimulator; BLyS; B-cell-activating factor; BAFF; Dendritic cell-derived TNF-like molecule; TNF- and APOL-related leukocyte expressed ligand 1; TALL-1; AltName: CD_antigen=CD257; Contains: Tumor necrosis factor ligand superfamily member 13b, membrane form; Contains: Tumor necrosis factor ligand superfamily member 13b, soluble form;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9Y275)  [Identity/coverage = 99.17%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TNFSF13B 
HGNC aliases NA
HGNC name tumor necrosis factor (ligand) superfamily, member 13b 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 13
Location 13q33.3
Position 108922076- 108959315
Strand +
Gene structure 7 exons
 
TOP 1-10 11-15 LAST 
Locus member number 12
H-Inv ID Transcript viewHIT000084619
Accession number AY129226.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Tumor necrosis factor ligand superfamily member 13B; B lymphocyte stimulator; BLyS; B-cell-activating factor; BAFF; Dendritic cell-derived TNF-like molecule; TNF- and APOL-related leukocyte expressed ligand 1; TALL-1; AltName: CD_antigen=CD257; Contains: Tumor necrosis factor ligand superfamily member 13b, membrane form; Contains: Tumor necrosis factor ligand superfamily member 13b, soluble form;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9Y275)  [Identity/coverage = 99.519%/72.98%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TNFSF13B 
HGNC aliases NA
HGNC name tumor necrosis factor (ligand) superfamily, member 13b 
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location 13q33.3
Position 108922475- 108959286
Strand +
Gene structure 6 exons
 
TOP 1-10 11-15 LAST 
Locus member number 13
H-Inv ID Transcript viewHIT000084620
Accession number AY129227.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Tumor necrosis factor ligand superfamily member 13B; B lymphocyte stimulator; BLyS; B-cell-activating factor; BAFF; Dendritic cell-derived TNF-like molecule; TNF- and APOL-related leukocyte expressed ligand 1; TALL-1; AltName: CD_antigen=CD257; Contains: Tumor necrosis factor ligand superfamily member 13b, membrane form; Contains: Tumor necrosis factor ligand superfamily member 13b, soluble form;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9Y275)  [Identity/coverage = 99.425%/61.05%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TNFSF13B 
HGNC aliases NA
HGNC name tumor necrosis factor (ligand) superfamily, member 13b 
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location 13q33.3
Position 108922688- 108959286
Strand +
Gene structure 5 exons
 
TOP 1-10 11-15 LAST 
Locus member number 14
H-Inv ID Transcript viewHIT000084621
Accession number AY129228.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Tumor necrosis factor ligand superfamily member 13B; B lymphocyte stimulator; BLyS; B-cell-activating factor; BAFF; Dendritic cell-derived TNF-like molecule; TNF- and APOL-related leukocyte expressed ligand 1; TALL-1; AltName: CD_antigen=CD257; Contains: Tumor necrosis factor ligand superfamily member 13b, membrane form; Contains: Tumor necrosis factor ligand superfamily member 13b, soluble form;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9Y275)  [Identity/coverage = 99.367%/55.44%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TNFSF13B 
HGNC aliases NA
HGNC name tumor necrosis factor (ligand) superfamily, member 13b 
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location 13q33.3
Position 108922730- 108959286
Strand +
Gene structure 5 exons
 
TOP 1-10 11-15 LAST 
Locus member number 15
H-Inv ID Transcript viewHIT000650062
Accession number HM636064.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Tumor necrosis factor ligand superfamily member 13B; B lymphocyte stimulator; BLyS; B-cell-activating factor; BAFF; Dendritic cell-derived TNF-like molecule; TNF- and APOL-related leukocyte expressed ligand 1; TALL-1; AltName: CD_antigen=CD257; Contains: Tumor necrosis factor ligand superfamily member 13b, membrane form; Contains: Tumor necrosis factor ligand superfamily member 13b, soluble form;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9Y275)  [Identity/coverage = 100.0%/56.49%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TNFSF13B 
HGNC aliases NA
HGNC name tumor necrosis factor (ligand) superfamily, member 13b 
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location 13q33.3
Position 108922244- 108939209
Strand +
Gene structure 3 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette;  Retained intron; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000428495;  Splicing isoformHIT000251540;  Splicing isoformHIT000038888; 
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0011450
Representative H-Inv ID Representative H-Inv IDHIT000038888
Accession number BC020674.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Tumor necrosis factor ligand superfamily member 13B isoform 1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006564)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol TNFSF13B 
HGNC aliases NA
HGNC name tumor necrosis factor (ligand) superfamily, member 13b 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000039668
No. of interaction 13
Interaction partner(s) HIP000026895;  HIP000027991;  HIP000031515;  HIP000031515;  HIP000031959;  HIP000058928;  HIP000062676;  HIP000062676;  HIP000096532;  HIP000096532;  HIP000147520;  HIP000147520;  HIP000256222; 
BIND NA
DIP 112429E;  113288E;  113532E;  114554E;  117045E;  117396E;  117447E; 
MINT NA
HPRD 02132;  02866;  04689;  04845;  07979;  09330;  12150;  14470;  16372; 
IntAct EBI-1072795;  EBI-1060514;  EBI-1065762;  EBI-1081810;  EBI-1082770;  EBI-2938860;  EBI-2932395;  EBI-1084250;  EBI-1084419; 
Database links RefSeq NM_006573; 
Ensembl ENST00000542136;  ENST00000486502;  ENST00000430559;  ENST00000493765;  ENST00000375887;  ENST00000479435; 
Entrez Gene Entrez Gene ID:10673; 
KEGG GENES KEGG GENES(10673); 
GeneCard GeneCardTNFSF13B;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Related H-InvDB links G-integraG-integra;  PPI viewerPPI view;  H-DBASH-DBAS;  Gene familyGene family;  Similarity Search ToolSimilarity search tool;  TACTTACT; 
Gene expression information   H-ANGEL DNAProbeLocator Last modified:20-Apr-2012
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator		 AceGene AGhsA170501; 
Affymetrix
GeneChip		 HG-Focus NA
HG-U133 223502_s_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 223502_s_at; 
HG-U133_Plus_2 223502_s_at; 
HG-U95 53773_at; 
HG-U95A NA
HG-U95B NA
HG-U95C 53773_at; 
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3500792;  3500793;  3500794;  3500795;  3500796;  3500798;  3500799;  3500802;  3500808;  3500810;  3500811;  3525032; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P14174; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P14174; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator; 

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  193003;  604595;  606258;  610361; 
Disease related mutation NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(10673); 
Disease Entrez Gene ID:(10673); 
Gene function Entrez Gene ID:(10673); 
Substance Entrez Gene ID:(10673); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA;