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H-InvDB_8.3 released on March 26, 2013.
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H-Inv cluster ID: HIX0008135 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: BDNF/NT-3 growth factors receptor isoform a precursor.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0008135
Genomic location  G-integra Help Chromosome 9
Location 9q21.33
Position 87283466- 87641985
Strand +
Antisense cluster ID(s) NA
Database links RefSeq NM_006180; 
Ensembl ENST00000395882;  ENST00000395866;  ENST00000304053;  ENST00000359847;  ENST00000376208;  ENST00000323115;  ENST00000277120;  ENST00000376214;  ENST00000376213; 
Entrez Gene Entrez Gene ID:4915; 
KEGG GENES KEGG GENES(4915); 
GeneCard GeneCardNTRK2;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Cluster member H-Inv ID(s) HIT000079218;  HIT000041379;  HIT000057648;  HIT000026670;  HIT000028108;  HIT000017134;  HIT000043697;  HIT000218074;  HIT000216667;  HIT000079048;  HIT000079220;  HIT000079219;  HIT000422701;  HIT000081031;  HIT000323557;  HIT000216668;  HIT000329053;  HIT000265619;  HIT000488909;  HIT000079217;  HIT000247746;  HIT000066980;  HIT000092355; 
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 
Mini-G Locus map Locus map

 
TOP 1-10 11-20 21-23 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000079218
Accession number AF410899.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BDNF/NT-3 growth factors receptor isoform a precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006171)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature Representative H-Inv IDRepresentative transcript; 
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87284693- 87637409
Strand +
Gene structure 19 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000041379
Accession number BC031835.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BDNF/NT-3 growth factors receptor isoform b precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001007098)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87284772- 87425933
Strand +
Gene structure 13 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000057648
Accession number BX649001.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87637347- 87641985
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000026670
Accession number AL713745.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87426245- 87430617
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000028108
Accession number AL833196.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87426721- 87430618
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000017134
Accession number AK092267.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87428292- 87430616
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000043697
Accession number AK123824.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87490971- 87492812
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000218074
Accession number U12140.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BDNF/NT-3 growth factors receptor isoform c precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001018074)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87285311- 87637238
Strand +
Gene structure 17 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000216667
Accession number S76473.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BDNF/NT-3 growth factors receptor isoform c precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001018074)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87285557- 87636953
Strand +
Gene structure 17 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000079048
Accession number AF400441.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BDNF/NT-3 growth factors receptor isoform c precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001018074)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87285559- 87636388
Strand +
Gene structure 17 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 11
H-Inv ID Transcript viewHIT000079220
Accession number AF410901.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BDNF/NT-3 growth factors receptor isoform d precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001018075)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87284693- 87492813
Strand +
Gene structure 15 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 12
H-Inv ID Transcript viewHIT000079219
Accession number AF410900.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BDNF/NT-3 growth factors receptor isoform e precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001018076)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87284693- 87492813
Strand +
Gene structure 14 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 13
H-Inv ID Transcript viewHIT000422701
Accession number AK289904.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BDNF/NT-3 growth factors receptor isoform b precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001007098)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87284638- 87425886
Strand +
Gene structure 13 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 14
H-Inv ID Transcript viewHIT000081031
Accession number AF508964.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BDNF/NT-3 growth factors receptor isoform b precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001007098)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87285567- 87430617
Strand +
Gene structure 12 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 15
H-Inv ID Transcript viewHIT000323557
Accession number X75958.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BDNF/NT-3 growth factors receptor isoform b precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001007098)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87285567- 87426187
Strand +
Gene structure 12 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 16
H-Inv ID Transcript viewHIT000216668
Accession number S76474.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BDNF/NT-3 growth factors receptor isoform b precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001007098)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87285557- 87425817
Strand +
Gene structure 12 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 17
H-Inv ID Transcript viewHIT000329053
Accession number AB209118.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Neurotrophin receptor tyrosine kinase type 2; Fragment;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q8WXJ4)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87283471- 87573178
Strand +
Gene structure 18 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 18
H-Inv ID Transcript viewHIT000265619
Accession number BC075804.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Neurotrophin receptor tyrosine kinase type 2; Fragment;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q8WXJ4)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87283466- 87426231
Strand +
Gene structure 15 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 19
H-Inv ID Transcript viewHIT000488909
Accession number AK294285.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Neurotrophic tyrosine kinase receptor type 2; Fragment;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9GMA1)  [Identity/coverage = 100.0%/57.3%] to Chlorocebus aethiops (Green monkey) (Cercopithecus aethiops). protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87287002- 87425978
Strand +
Gene structure 12 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 20
H-Inv ID Transcript viewHIT000079217
Accession number AF410898.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Neurotrophin receptor tyrosine kinase type 2 truncated isoform; Fragment;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q8WXJ8)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87366894- 87492813
Strand +
Gene structure 3 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 21
H-Inv ID Transcript viewHIT000247746
Accession number AJ420458.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87428988- 87430617
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 22
H-Inv ID Transcript viewHIT000066980
Accession number AF086101.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87426894- 87427673
Strand +
Gene structure 1 exons
 
TOP 1-10 11-20 21-23 LAST 
Locus member number 23
H-Inv ID Transcript viewHIT000092355
Accession number BC031309.2
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q21.33
Position 87430016- 87430617
Strand +
Gene structure 1 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Internal acceptor site; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000079217;  Splicing isoformHIT000265619;  Splicing isoformHIT000329053;  Splicing isoformHIT000488909; 
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0008135
Representative H-Inv ID Representative H-Inv IDHIT000079218
Accession number AF410899.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BDNF/NT-3 growth factors receptor isoform a precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_006171)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID HIF0001627
Gene family/group name Tyrosine protein kinase (IPR001245).
Evidence motif (InterPro) ID IPR001245
Gene symbol/name HGNC symbol NTRK2 
HGNC aliases NA
HGNC name neurotrophic tyrosine kinase, receptor, type 2 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000103729
No. of interaction 15
Interaction partner(s) HIP000011562;  HIP000024053;  HIP000031656;  HIP000035745;  HIP000036366;  HIP000042960;  HIP000051778;  HIP000059948;  HIP000065350;  HIP000079240;  HIP000095247;  HIP000104340;  HIP000134811;  HIP000134811;  HIP000258575; 
BIND 130714; 
DIP NA
MINT NA
HPRD 00996;  02135;  02730;  03000;  03084;  03254;  10986;  14796; 
IntAct NA
Database links RefSeq NM_006180; 
Ensembl ENST00000395882;  ENST00000395866;  ENST00000304053;  ENST00000359847;  ENST00000376208;  ENST00000323115;  ENST00000277120;  ENST00000376214;  ENST00000376213; 
Entrez Gene Entrez Gene ID:4915; 
KEGG GENES KEGG GENES(4915); 
GeneCard GeneCardNTRK2;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Related H-InvDB links G-integraG-integra;  PPI viewerPPI view;  H-DBASH-DBAS;  Tyrosine protein kinase (IPR001245). Similarity Search ToolSimilarity search tool;  TACTTACT; 
Gene expression information   H-ANGEL DNAProbeLocator Last modified:20-Apr-2012
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator		 AceGene AGhsA191022; 
Affymetrix
GeneChip		 HG-Focus 207152_at; 
HG-U133 207152_at; 
HG-U133A 207152_at; 
HG-U133A_2 207152_at; 
HG-U133B NA
HG-U133_Plus_2 207152_at; 
HG-U95 1354_at;  1355_g_at; 
HG-U95A 1354_at;  1355_g_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3177118;  3177121;  3177122;  3177123;  3177124;  3177126;  3177127;  3177128;  3177129;  3177131;  3177132;  3177133;  3177135;  3177136;  3177137;  3177155;  3177156;  3177170;  3177172;  3177176;  3177185;  3177187;  3177188;  3212607;  3212608; 
HuGeneFL S76473_s_at;  U12140_at; 
Agilent Human 1A Oligo Microarray:PGID215 A_23_P216772; 
Whole Human Genome Oligo Microarray:PGID247 A_24_P343559; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator; 

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:  600456;  Title: NEUROTROPHIC TYROSINE KINASE, RECEPTOR, TYPE 2
Co-localized orphan diseases OMIM ID:  105550;  190100;  267700;  600884;  605749;  607152;  609320;  611631; 
Disease related mutation MutationView:  600456; 
JRE-1.4.0 or later is required.Download JRE at Sun's web site.
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(4915); 
Disease Entrez Gene ID:(4915); 
Gene function Entrez Gene ID:(4915); 
Substance Entrez Gene ID:(4915); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA;