H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Inv cluster ID: HIX0007536 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Clavesin-1.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0007536
Genomic location  G-integra Help Chromosome 8
Location 8q12.3
Position 61969717- 62414204
Strand +
Antisense cluster ID(s) HIX0034267 overlap at CDSs (all)
HIX0208205 overlap at CDSs (all)
Database links RefSeq NM_173519; 
Ensembl ENST00000520712;  ENST00000518592;  ENST00000325897;  ENST00000521189;  ENST00000518858;  ENST00000523868;  ENST00000522621;  ENST00000518426;  ENST00000522928;  ENST00000519846;  ENST00000524095; 
Entrez Gene Entrez Gene ID:157807; 
KEGG GENES KEGG GENES(157807); 
GeneCard GeneCardCLVS1;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Cluster member H-Inv ID(s) HIT000052726;  HIT000045026;  HIT000016508;  HIT000019422;  HIT000250698;  HIT000243065;  HIT000270939;  HIT000431906;  HIT000099045;  HIT000278808; 
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 
Mini-G Locus map Locus map

 
TOP 1-10 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000052726
Accession number BC042617.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Clavesin-1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_775790)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol CLVS1 
HGNC aliases "retinaldehyde binding protein 1-like 1" 
HGNC name clavesin 1 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 8
Location 8q12.3
Position 62200550- 62414203
Strand +
Gene structure 6 exons
 
TOP 1-10 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000045026
Accession number AK125153.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Clavesin-1; Cellular retinaldehyde-binding protein-like; Retinaldehyde-binding protein 1-like 1;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q8IUQ0)  [Identity/coverage = 100.0%/59.6%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol CLVS1 
HGNC aliases "retinaldehyde binding protein 1-like 1" 
HGNC name clavesin 1 
Transcript feature NA
Genomic location  G-integra Chromosome 8
Location 8q12.3
Position 62212816- 62414181
Strand +
Gene structure 5 exons
 
TOP 1-10 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000016508
Accession number AK091641.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Clavesin-1; Cellular retinaldehyde-binding protein-like; Retinaldehyde-binding protein 1-like 1;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q8IUQ0)  [Identity/coverage = 98.333%/16.95%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol CLVS1 
HGNC aliases "retinaldehyde binding protein 1-like 1" 
HGNC name clavesin 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 8
Location 8q12.3
Position 62200539- 62290934
Strand +
Gene structure 3 exons
 
TOP 1-10 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000019422
Accession number AK094567.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Clavesin-1; Cellular retinaldehyde-binding protein-like; Retinaldehyde-binding protein 1-like 1;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q8IUQ0)  [Identity/coverage = 100.0%/7.91%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol CLVS1 
HGNC aliases "retinaldehyde binding protein 1-like 1" 
HGNC name clavesin 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 8
Location 8q12.3
Position 62377130- 62414188
Strand +
Gene structure 2 exons
 
TOP 1-10 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000250698
Accession number AY094971.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Clavesin-1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_775790)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol CLVS1 
HGNC aliases "retinaldehyde binding protein 1-like 1" 
HGNC name clavesin 1 
Transcript feature NA
Genomic location  G-integra Chromosome 8
Location 8q12.3
Position 62200567- 62414188
Strand +
Gene structure 6 exons
 
TOP 1-10 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000243065
Accession number AF445194.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Clavesin-1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_775790)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol CLVS1 
HGNC aliases "retinaldehyde binding protein 1-like 1" 
HGNC name clavesin 1 
Transcript feature NA
Genomic location  G-integra Chromosome 8
Location 8q12.3
Position 62200531- 62412412
Strand +
Gene structure 6 exons
 
TOP 1-10 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000270939
Accession number CR591744.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Clavesin-1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_775790)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol CLVS1 
HGNC aliases "retinaldehyde binding protein 1-like 1" 
HGNC name clavesin 1 
Transcript feature NA
Genomic location  G-integra Chromosome 8
Location 8q12.3
Position 62200550- 62412397
Strand +
Gene structure 6 exons
 
TOP 1-10 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000431906
Accession number AK313040.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Clavesin-1; Cellular retinaldehyde-binding protein-like; Retinaldehyde-binding protein 1-like 1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q8IUQ0)  [Identity/coverage = 99.435%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol CLVS1 
HGNC aliases "retinaldehyde binding protein 1-like 1" 
HGNC name clavesin 1 
Transcript feature NA
Genomic location  G-integra Chromosome 8
Location 8q12.3
Position 62200578- 62412101
Strand +
Gene structure 6 exons
 
TOP 1-10 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000099045
Accession number BC048992.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Clavesin-1; Cellular retinaldehyde-binding protein-like; Retinaldehyde-binding protein 1-like 1;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q8IUQ0)  [Identity/coverage = 100.0%/57.34%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol CLVS1 
HGNC aliases "retinaldehyde binding protein 1-like 1" 
HGNC name clavesin 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 8
Location 8q12.3
Position 62200531- 62414204
Strand +
Gene structure 5 exons
 
TOP 1-10 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000278808
Accession number CR599613.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Clavesin-1; Cellular retinaldehyde-binding protein-like; Retinaldehyde-binding protein 1-like 1;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q8IUQ0)  [Identity/coverage = 98.81%/71.19%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol CLVS1 
HGNC aliases "retinaldehyde binding protein 1-like 1" 
HGNC name clavesin 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 8
Location 8q12.3
Position 62200552- 62412351
Strand +
Gene structure 5 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette;  Internal donor site; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000019422;  Splicing isoformHIT000278808;  Splicing isoformHIT000016508;  Splicing isoformHIT000099045;  Splicing isoformHIT000052726; 
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0007536
Representative H-Inv ID Representative H-Inv IDHIT000052726
Accession number BC042617.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Clavesin-1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_775790)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID HIF0003527
Gene family/group name Cellular retinaldehyde-binding/triple function, N-terminal (IPR008273).
Evidence motif (InterPro) ID IPR008273
Gene symbol/name HGNC symbol CLVS1 
HGNC aliases "retinaldehyde binding protein 1-like 1" 
HGNC name clavesin 1 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000059414
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NM_173519; 
Ensembl ENST00000520712;  ENST00000518592;  ENST00000325897;  ENST00000521189;  ENST00000518858;  ENST00000523868;  ENST00000522621;  ENST00000518426;  ENST00000522928;  ENST00000519846;  ENST00000524095; 
Entrez Gene Entrez Gene ID:157807; 
KEGG GENES KEGG GENES(157807); 
GeneCard GeneCardCLVS1;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Related H-InvDB links G-integraG-integra;  PPI viewerPPI view;  H-DBASH-DBAS;  Cellular retinaldehyde-binding/triple function, N-terminal (IPR008273). Similarity Search ToolSimilarity search tool;  TACTTACT; 
Gene expression information   H-ANGEL DNAProbeLocator Last modified:20-Apr-2012
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator		 AceGene AGhsC091001; 
Affymetrix
GeneChip		 HG-Focus NA
HG-U133 230217_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 230217_at; 
HG-U133_Plus_2 230217_at; 
HG-U95 54504_at; 
HG-U95A NA
HG-U95B 54504_at; 
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3100498;  3100501;  3100502;  3100503;  3100527;  3100541;  3100543;  3100549;  3100550;  3100551;  3137501;  3137534;  3137535;  3137536;  3137537; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P8977; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P8977; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator; 

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  128700;  600668;  606789;  609197;  611046;  611073;  611945; 
Disease related mutation NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(157807); 
Disease Entrez Gene ID:(157807); 
Gene function Entrez Gene ID:(157807); 
Substance Entrez Gene ID:(157807); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA;