H-InvDB_8.3 released on March 26, 2013. Search by Keyword H-Inv ID (HIT) H-Inv cluster ID (HIX) H-Inv protein ID (HIP) H-Inv gene family/group (HIF) Accession number Chromosome number Chromosome band Definition* Data source ID --- CCDS ID dbSNP ID (rs number) EC number Ensembl ID EntrezGene ID FR ID FR Accession number GO ID GO name* HGNC gene symbol HGNC gene name* InterPro ID InterPro name* OMIM ID OMIM title* Pathway ID Pathway name* RefSeq (gene) ID RefSeq (protein) ID SCOP ID UniProt for Advanced Search

Home Quick guide Navi BLAST Site map Download Contact us Help

Transcript view Protein view G-integra DiseaseInfo Viewer H-ANGEL Evola PPI view Gene Family/Group Hyperlink MS

H-Inv cluster ID: HIX0007498 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Similar to Uncharacterized protein;

		Select format Flat file XML file

Gene structure

H-Inv cluster ID		HIX0007498
Genomic location	Chromosome	8
	Location	8q11.21
	Position	49966870- 49988642
	Strand	+
Antisense cluster ID(s)		NA
Database links	RefSeq	NM_001007176;
	Ensembl	ENST00000517663;  ENST00000399653;  ENST00000522267;  ENST00000303202;
	Entrez Gene	Entrez Gene ID:492307;
	KEGG GENES	KEGG GENES(492307);
	GeneCard	C8orf22;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Cluster member H-Inv ID(s)		HIT000246314;  HIT000038216;
Additional cluster member candidate(s)		NA
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

 

TOP 1-2 LAST

Cluster member (s)

Locus member number		1
H-Inv ID		HIT000246314
Accession number		AJ276240.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Uncharacterized protein;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (F1MT72)  [Identity/coverage = 59.459%/79.58%] to Bos taurus (Bovine). protein.
Gene symbol/name	HGNC symbol	C8orf22
	HGNC aliases	NA
	HGNC name	chromosome 8 open reading frame 22
Transcript feature		Representative transcript;  Splicing isoform
Genomic location	Chromosome	8
	Location	8q11.21
	Position	49984917- 49988161
	Strand	+
Gene structure		5 exons

 

TOP 1-2 LAST

Locus member number		2
H-Inv ID		HIT000038216
Accession number		BC017981.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Uncharacterized protein;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (F1MT72)  [Identity/coverage = 70.115%/61.27%] to Bos taurus (Bovine). protein.
Gene symbol/name	HGNC symbol	C8orf22
	HGNC aliases	NA
	HGNC name	chromosome 8 open reading frame 22
Transcript feature		Splicing isoform
Genomic location	Chromosome	8
	Location	8q11.21
	Position	49984907- 49988642
	Strand	+
Gene structure		5 exons

Alternative splicing (AS) information

Pattern of alternative splicing isoforms	3' terminal AS;
Position of alternative splicing isoforms	Internal acceptor site;
Alternative splicing isoform H-Inv ID(s)	HIT000246314;  HIT000038216;
Related H-InvDB links	H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

Gene function information

H-Inv cluster ID		HIX0007498
Representative H-Inv ID		HIT000246314
Accession number		AJ276240.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Uncharacterized protein;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (F1MT72)  [Identity/coverage = 59.459%/79.58%] to Bos taurus (Bovine). protein.
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	C8orf22
	HGNC aliases	NA
	HGNC name	chromosome 8 open reading frame 22
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000034988
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NM_001007176;
	Ensembl	ENST00000517663;  ENST00000399653;  ENST00000522267;  ENST00000303202;
	Entrez Gene	Entrez Gene ID:492307;
	KEGG GENES	KEGG GENES(492307);
	GeneCard	C8orf22;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Related H-InvDB links		G-integra;  PPI view;  H-DBAS;  Gene family;  Similarity search tool;  TACT;

Gene expression information

Last modified:20-Apr-2012

Tissue-specific expression			NA
Probe information	AceGene		NA
	Affymetrix GeneChip	HG-Focus	NA
		HG-U133	235981_at;
		HG-U133A	NA
		HG-U133A_2	NA
		HG-U133B	235981_at;
		HG-U133_Plus_2	235981_at;
		HG-U95	45679_at;
		HG-U95A	NA
		HG-U95B	45679_at;
		HG-U95C	NA
		HG-U95D	NA
		HG-U95E	NA
		HG-U95Av2	NA
		HuEx-1_0	3097581;  3097582;  3097583;  3097584;  3097585;  3097586;  3097587;  3097588;  3134605;  3134606;
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	NA
		Whole Human Genome Oligo Microarray:PGID247	A_32_P80741;
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;

Disease/pathology information

Last modified:20-Apr-2012

Disease relation			Disease name:NA
Related information in OMIM			OMIM ID:NA Title:NA
Co-localized orphan diseases			OMIM ID:  128700;  600668;  606789;  608984;  609197;  609981;  610099;  611073;  611945;  612775;
Disease related mutation			NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA)	Gene name	Entrez Gene ID:(492307);
	Disease	Entrez Gene ID:(492307);
	Gene function	Entrez Gene ID:(492307);
	Substance	Entrez Gene ID:(492307);
Related H-InvDB links			DiseaseInfo Viewer;  LEGENDA;