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H-Inv cluster ID: HIX0005752 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: HLA class II histocompatibility antigen, DR alpha chain; MHC class II antigen DRA; Precursor;

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Gene structure

H-Inv cluster ID		HIX0005752
Genomic location	Chromosome	6_mann_hap4
	Location	NA
	Position	3749679- 3754890
	Strand	+
Antisense cluster ID(s)		NA
Database links	RefSeq	NM_019111;
	Ensembl	ENST00000462200;  ENST00000481943;  ENST00000482781;  ENST00000442960;  ENST00000542549;  ENST00000459705;
	Entrez Gene	Entrez Gene ID:3122;
	KEGG GENES	KEGG GENES(3122);
	GeneCard	HLA-DRA;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Cluster member H-Inv ID(s)		HIT000191056;  HIT000191361_02;  HIT000431989;  HIT000267863_02;  HIT000320813_02;  HIT000195653_07;  HIT000191059_06;  HIT000191055_07;
Additional cluster member candidate(s)		NA
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

 

TOP 1-8 LAST

Cluster member (s)

Locus member number		1
H-Inv ID		HIT000191056
Accession number		J00194.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		HLA class II histocompatibility antigen, DR alpha chain; MHC class II antigen DRA; Precursor;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P01903)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	HLA-DRA
	HGNC aliases	NA
	HGNC name	major histocompatibility complex, class II, DR alpha
Transcript feature		Representative transcript;
Genomic location	Chromosome	6_mann_hap4
	Location	NA
	Position	3749761- 3754890
	Strand	+
Gene structure		5 exons

 

TOP 1-8 LAST

Locus member number		2
H-Inv ID		HIT000191361_02
Accession number		K01171.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		HLA class II histocompatibility antigen, DR alpha chain; MHC class II antigen DRA; Precursor;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P01903)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	HLA-DRA
	HGNC aliases	NA
	HGNC name	major histocompatibility complex, class II, DR alpha
Transcript feature		NA
Genomic location	Chromosome	6_mann_hap4
	Location	NA
	Position	3749774- 3754888
	Strand	+
Gene structure		5 exons

 

TOP 1-8 LAST

Locus member number		3
H-Inv ID		HIT000431989
Accession number		AK313123.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		HLA class II histocompatibility antigen, DR alpha chain; MHC class II antigen DRA; Precursor;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P01903)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	HLA-DRA
	HGNC aliases	NA
	HGNC name	major histocompatibility complex, class II, DR alpha
Transcript feature		NA
Genomic location	Chromosome	6_mann_hap4
	Location	NA
	Position	3749724- 3753746
	Strand	+
Gene structure		4 exons

 

TOP 1-8 LAST

Locus member number		4
H-Inv ID		HIT000267863_02
Accession number		CR457013.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		HLA class II histocompatibility antigen, DR alpha chain; MHC class II antigen DRA; Precursor;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P01903)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	HLA-DRA
	HGNC aliases	NA
	HGNC name	major histocompatibility complex, class II, DR alpha
Transcript feature		NA
Genomic location	Chromosome	6_mann_hap4
	Location	NA
	Position	3749788- 3753746
	Strand	+
Gene structure		4 exons

 

TOP 1-8 LAST

Locus member number		5
H-Inv ID		HIT000320813_02
Accession number		V00523.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to HLA class II histocompatibility antigen, DR alpha chain; MHC class II antigen DRA; Precursor;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (P01903)  [Identity/coverage = 99.552%/87.8%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	HLA-DRA
	HGNC aliases	NA
	HGNC name	major histocompatibility complex, class II, DR alpha
Transcript feature		NA
Genomic location	Chromosome	6_mann_hap4
	Location	NA
	Position	3752293- 3754837
	Strand	+
Gene structure		4 exons

 

TOP 1-8 LAST

Locus member number		6
H-Inv ID		HIT000195653_07
Accession number		M35979.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		MHC class II HLA-DR-alpha chain; Precursor; Fragment;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (O19720)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	HLA-DRA
	HGNC aliases	NA
	HGNC name	major histocompatibility complex, class II, DR alpha
Transcript feature		NA
Genomic location	Chromosome	6_mann_hap4
	Location	NA
	Position	3749781- 3752351
	Strand	+
Gene structure		2 exons

 

TOP 1-8 LAST

Locus member number		7
H-Inv ID		HIT000191059_06
Accession number		J00197.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to HLA class II histocompatibility antigen, DR alpha chain; MHC class II antigen DRA; Precursor;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (P01903)  [Identity/coverage = 100.0%/14.96%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	6_mann_hap4
	Location	NA
	Position	3749760- 3752317
	Strand	+
Gene structure		2 exons

 

TOP 1-8 LAST

Locus member number		8
H-Inv ID		HIT000191055_07
Accession number		J00193.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Non-protein-coding;
Definition		Non-protein-coding transcript, uncharacterized transcript.
Similarity category		Category: Non-protein coding transcript.
		NA
Gene symbol/name	HGNC symbol	HLA-DRA
	HGNC aliases	NA
	HGNC name	major histocompatibility complex, class II, DR alpha
Transcript feature		NA
Genomic location	Chromosome	6_mann_hap4
	Location	NA
	Position	3752282- 3752327
	Strand	+
Gene structure		1 exons

Gene function information

H-Inv cluster ID		HIX0005752
Representative H-Inv ID		HIT000191056
Accession number		J00194.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		HLA class II histocompatibility antigen, DR alpha chain; MHC class II antigen DRA; Precursor;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P01903)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group	H-Inv gene family/group ID	HIF0000002
	Gene family/group name	Major histocompatibility complex (MHC).
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	HLA-DRA
	HGNC aliases	NA
	HGNC name	major histocompatibility complex, class II, DR alpha
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000028574
	No. of interaction	9
	Interaction partner(s)	HIP000016055;  HIP000051339;  HIP000077638;  HIP000102300;  HIP000106438;  HIP000116332;  HIP000136548;  HIP000193291;  HIP000354166;
	BIND	145865;
	DIP	132189E;
	MINT	NA
	HPRD	01508;  04656;  06123;  10293;  11062;
	IntAct	EBI-1965669;
Database links	RefSeq	NM_019111;
	Ensembl	ENST00000462200;  ENST00000481943;  ENST00000482781;  ENST00000442960;  ENST00000542549;  ENST00000459705;
	Entrez Gene	Entrez Gene ID:3122;
	KEGG GENES	KEGG GENES(3122);
	GeneCard	HLA-DRA;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Related H-InvDB links		G-integra;  PPI view;  H-DBAS;  Gene family;  Similarity search tool;  TACT;