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H-InvDB_8.3 released on March 26, 2013.
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H-Inv cluster ID: HIX0001933 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: BRCA1-A complex subunit BRE isoform 2.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0001933
Genomic location  G-integra Help Chromosome 2
Location 2p23.2
Position 27994426- 28561768
Strand +
Antisense cluster ID(s) NA
Database links RefSeq NM_199194
Ensembl ENST00000342045ENST00000379666ENST00000379632ENST00000476552ENST00000361704ENST00000436924ENST00000344773ENST00000379624ENST00000379623ENST00000448427ENST00000483992ENST00000379629ENST00000492702ENST00000296102ENST00000496951ENST00000472192
Entrez Gene Entrez Gene ID:9577Entrez Gene ID:9553
KEGG GENES KEGG GENES(9577)
GeneCard GeneCardBREGeneCardMRPL33*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000193395HIT000030259HIT000038993HIT000001740HIT000034390HIT000002572HIT000023175HIT000062369HIT000254699HIT000267738HIT000268986HIT000266307HIT000266168HIT000079393HIT000079392HIT000079395HIT000079394HIT000423883HIT000218500HIT000273327HIT000286183pHIT000004011
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-10 11-20 21-22 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000193395
Accession number L38616.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BRCA1-A complex subunit BRE isoform 2.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_954664)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol BRE 
HGNC aliases NA
HGNC name brain and reproductive organ-expressed (TNFRSF1A modulator) 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 28113659- 28561765
Strand +
Gene structure 13 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000030259
Accession number BC001251.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BRCA1-A complex subunit BRE isoform 2.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_954664)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol BRE 
HGNC aliases NA
HGNC name brain and reproductive organ-expressed (TNFRSF1A modulator) 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 28117402- 28561766
Strand +
Gene structure 11 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000038993
Accession number BC020834.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition 39S ribosomal protein L33, mitochondrial isoform a.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_004882)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol MRPL33 
HGNC aliases NA
HGNC name mitochondrial ribosomal protein L33 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 27994597- 28002599
Strand +
Gene structure 4 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000001740
Accession number AF047440.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition 39S ribosomal protein L33, mitochondrial isoform a.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_004882)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol MRPL33 
HGNC aliases NA
HGNC name mitochondrial ribosomal protein L33 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 27994611- 28002598
Strand +
Gene structure 4 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000034390
Accession number BC009475.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition 39S ribosomal protein L33, mitochondrial isoform a.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_004882)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol MRPL33 
HGNC aliases NA
HGNC name mitochondrial ribosomal protein L33 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 27994633- 28002599
Strand +
Gene structure 4 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000002572
Accession number AK000097.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BRCA1-A complex subunit BRE isoform 1.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_004890)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol BRE 
HGNC aliases NA
HGNC name brain and reproductive organ-expressed (TNFRSF1A modulator) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 28113596- 28561766
Strand +
Gene structure 13 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000023175
Accession number AK098345.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to BRCA1-A complex subunit BRE isoform 1.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_004890)  [Identity/coverage = 98.113%/12.77%] to Homo sapiens protein.
Gene symbol/name HGNC symbol BRE 
HGNC aliases NA
HGNC name brain and reproductive organ-expressed (TNFRSF1A modulator) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 28548879- 28561765
Strand +
Gene structure 2 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000062369
Accession number AF015767.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BRCA1-A complex subunit BRE isoform 2.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_954664)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol BRE 
HGNC aliases NA
HGNC name brain and reproductive organ-expressed (TNFRSF1A modulator) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 28113617- 28561765
Strand +
Gene structure 12 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000254699
Accession number AY438031.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BRCA1-A complex subunit BRE isoform 2.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_954664)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol BRE 
HGNC aliases NA
HGNC name brain and reproductive organ-expressed (TNFRSF1A modulator) 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 28117424- 28561380
Strand +
Gene structure 11 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000267738
Accession number CR456888.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition 39S ribosomal protein L33, mitochondrial isoform a.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_004882)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol MRPL33 
HGNC aliases NA
HGNC name mitochondrial ribosomal protein L33 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 27994645- 28002349
Strand +
Gene structure 4 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 11
H-Inv ID Transcript viewHIT000268986
Accession number CR542117.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition 39S ribosomal protein L33, mitochondrial isoform a.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_004882)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol MRPL33 
HGNC aliases NA
HGNC name mitochondrial ribosomal protein L33 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 27994645- 28002346
Strand +
Gene structure 4 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 12
H-Inv ID Transcript viewHIT000266307
Accession number BC090047.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition 39S ribosomal protein L33, mitochondrial isoform b.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_663303)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol MRPL33 
HGNC aliases NA
HGNC name mitochondrial ribosomal protein L33 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 27994584- 28002601
Strand +
Gene structure 3 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 13
H-Inv ID Transcript viewHIT000266168
Accession number BC087846.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition 39S ribosomal protein L33, mitochondrial isoform b.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_663303)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol MRPL33 
HGNC aliases NA
HGNC name mitochondrial ribosomal protein L33 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 27994620- 28002600
Strand +
Gene structure 3 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 14
H-Inv ID Transcript viewHIT000079393
Accession number AF420603.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BRCA1-A complex subunit BRE isoform 3.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_954663)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol BRE 
HGNC aliases NA
HGNC name brain and reproductive organ-expressed (TNFRSF1A modulator) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 28113660- 28561583
Strand +
Gene structure 14 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 15
H-Inv ID Transcript viewHIT000079392
Accession number AF420602.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BRCA1-A complex subunit BRE isoform 3.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_954663)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol BRE 
HGNC aliases NA
HGNC name brain and reproductive organ-expressed (TNFRSF1A modulator) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 28113660- 28561583
Strand +
Gene structure 13 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 16
H-Inv ID Transcript viewHIT000079395
Accession number AF420605.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BRCA1-A complex subunit BRE; BRCA1/BRCA2-containing complex subunit 45; Brain and reproductive organ-expressed protein;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9NXR7)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol BRE 
HGNC aliases NA
HGNC name brain and reproductive organ-expressed (TNFRSF1A modulator) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 28113660- 28561583
Strand +
Gene structure 12 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 17
H-Inv ID Transcript viewHIT000079394
Accession number AF420604.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to BRCA1-A complex subunit BRE isoform 3.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_954663)  [Identity/coverage = 100.0%/96.54%] to Homo sapiens protein.
Gene symbol/name HGNC symbol BRE 
HGNC aliases NA
HGNC name brain and reproductive organ-expressed (TNFRSF1A modulator) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 28113660- 28561583
Strand +
Gene structure 12 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 18
H-Inv ID Transcript viewHIT000423883
Accession number AK291086.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BRCA1-A complex subunit BRE; BRCA1/BRCA2-containing complex subunit 45; Brain and reproductive organ-expressed protein;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9NXR7)  [Identity/coverage = 99.478%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol BRE 
HGNC aliases NA
HGNC name brain and reproductive organ-expressed (TNFRSF1A modulator) 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 28113606- 28561471
Strand +
Gene structure 12 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 19
H-Inv ID Transcript viewHIT000218500
Accession number U19178.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to BRCA1-A complex subunit BRE; BRCA1/BRCA2-containing complex subunit 45; Brain and reproductive organ-expressed protein;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9NXR7)  [Identity/coverage = 99.363%/81.98%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 28210859- 28561766
Strand +
Gene structure 10 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 20
H-Inv ID Transcript viewHIT000273327
Accession number CR594132.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to BRCA1-A complex subunit BRE; BRCA1/BRCA2-containing complex subunit 45; Brain and reproductive organ-expressed protein;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9NXR7)  [Identity/coverage = 100.0%/40.73%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol BRE 
HGNC aliases NA
HGNC name brain and reproductive organ-expressed (TNFRSF1A modulator) 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 28460069- 28561748
Strand +
Gene structure 5 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 21
H-Inv ID Transcript viewHIT000286183
Accession number CR606988.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to BRCA1-A complex subunit BRE; BRCA1/BRCA2-containing complex subunit 45; Brain and reproductive organ-expressed protein;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9NXR7)  [Identity/coverage = 98.611%/18.8%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol BRE 
HGNC aliases NA
HGNC name brain and reproductive organ-expressed (TNFRSF1A modulator) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 28521196- 28561651
Strand +
Gene structure 2 exons
 
TOP 1-10 11-20 21-22 LAST 
Locus member number 22
H-Inv ID Transcript viewpHIT000004011
Accession number NA
CAGE tag ID H04BA94H1102;  H05BA07I1801;  H05BF21B1707;  H06BA78F0504;  H08BA08I0511; 
EST ID NA
Coding potential Protein coding; 
Definition Similar to 39S ribosomal protein L33, mitochondrial; L33mt; MRP-L33;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O75394)  [Identity/coverage = 98.077%/80.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2p23.2
Position 27994426- 28002349
Strand +
Gene structure 3 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette;  Internal acceptor site;  Internal donor site;  Mutually exclusive; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000266307Splicing isoformHIT000079392Splicing isoformHIT000002572Splicing isoformHIT000079395Splicing isoformHIT000193395Splicing isoformHIT000062369Splicing isoformHIT000023175Splicing isoformHIT000079393Splicing isoformHIT000079394Splicing isoformHIT000001740Splicing isoformHIT000286183
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0001933
Representative H-Inv ID Representative H-Inv IDHIT000193395
Accession number L38616.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BRCA1-A complex subunit BRE isoform 2.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_954664)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID HIF0003673
Gene family/group name Human gene family/group candidate, HIF0003673.
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol BRE  MRPL33 
HGNC aliases NA
HGNC name brain and reproductive organ-expressed (TNFRSF1A modulator)  mitochondrial ribosomal protein L33 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000101138
No. of interaction 4
Interaction partner(s) HIP000022407HIP000032052HIP000046905HIP000046905
BIND NA
DIP NA
MINT MINT-65611; 
HPRD 01417;  16104; 
IntAct EBI-737729; 
Database links RefSeq NM_199194
Ensembl ENST00000342045ENST00000379666ENST00000379632ENST00000476552ENST00000361704ENST00000436924ENST00000344773ENST00000379624ENST00000379623ENST00000448427ENST00000483992ENST00000379629ENST00000492702ENST00000296102ENST00000496951ENST00000472192
Entrez Gene Entrez Gene ID:9577Entrez Gene ID:9553
KEGG GENES KEGG GENES(9577)
GeneCard GeneCardBREGeneCardMRPL33*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Human gene family/group candidate, HIF0003673. Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:20-Apr-2012
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsC190217; 
Affymetrix
GeneChip
HG-Focus 205550_s_at; 
HG-U133 205550_s_at;  211566_x_at;  212645_x_at; 
HG-U133A 205550_s_at;  211566_x_at;  212645_x_at; 
HG-U133A_2 205550_s_at;  211566_x_at;  212645_x_at; 
HG-U133B NA
HG-U133_Plus_2 205550_s_at;  211566_x_at;  212645_x_at; 
HG-U95 38053_s_at; 
HG-U95A 38053_s_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2474794;  2474795;  2474804;  2474816;  2474829;  2474830;  2474837;  2474852;  2474894;  2474897;  2474898;  2474907;  2474935;  2474936;  2474937;  2474938;  2474939;  2546184; 
HuGeneFL L38616_at; 
Agilent Human 1A Oligo Microarray:PGID215 A_23_P22160; 
Whole Human Genome Oligo Microarray:PGID247 A_32_P132796; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  600666602499609955610760
Disease related mutation NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(9577);  Entrez Gene ID:(9553); 
Disease Entrez Gene ID:(9577);  Entrez Gene ID:(9553); 
Gene function Entrez Gene ID:(9577);  Entrez Gene ID:(9553); 
Substance Entrez Gene ID:(9577);  Entrez Gene ID:(9553); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA