H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Inv cluster ID: HIX0001372 Created date: 26-Mar-2013 Last modified: 26-Mar-2013
Definition: Glycosaminoglycan xylosylkinase precursor.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0001372
Genomic location  G-integra Help Chromosome 1
Location 1q25.2
Position 178994939- 179045702
Strand +
Antisense cluster ID(s) NA
Database links RefSeq NM_014864
Ensembl ENST00000440702ENST00000263733
Entrez Gene Entrez Gene ID:9917
KEGG GENES KEGG GENES(9917)
GeneCard GeneCardFAM20B*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000000192HIT000053684HIT000053040HIT000487740HIT000422786
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-5 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000000192
Accession number AB007944.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Glycosaminoglycan xylosylkinase precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_055679)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol FAM20B 
HGNC aliases NA
HGNC name family with sequence similarity 20, member B 
Transcript feature Representative H-Inv IDRepresentative transcript; 
Genomic location  G-integra Chromosome 1
Location 1q25.2
Position 178995031- 179045697
Strand +
Gene structure 8 exons
 
TOP 1-5 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000053684
Accession number BC051794.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Glycosaminoglycan xylosylkinase precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_055679)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol FAM20B 
HGNC aliases NA
HGNC name family with sequence similarity 20, member B 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1q25.2
Position 178995074- 179045698
Strand +
Gene structure 8 exons
 
TOP 1-5 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000053040
Accession number BC046441.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Glycosaminoglycan xylosylkinase precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_055679)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol FAM20B 
HGNC aliases NA
HGNC name family with sequence similarity 20, member B 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1q25.2
Position 178995206- 179041775
Strand +
Gene structure 8 exons
 
TOP 1-5 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000487740
Accession number AB480690.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Glycosaminoglycan xylosylkinase precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_055679)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol FAM20B 
HGNC aliases NA
HGNC name family with sequence similarity 20, member B 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1q25.2
Position 178995074- 179045702
Strand +
Gene structure 8 exons
 
TOP 1-5 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000422786
Accession number AK289989.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Glycosaminoglycan xylosylkinase precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_055679)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol FAM20B 
HGNC aliases NA
HGNC name family with sequence similarity 20, member B 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1q25.2
Position 178995176- 179041692
Strand +
Gene structure 8 exons

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0001372
Representative H-Inv ID Representative H-Inv IDHIT000000192
Accession number AB007944.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Glycosaminoglycan xylosylkinase precursor.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_055679)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol FAM20B 
HGNC aliases NA
HGNC name family with sequence similarity 20, member B 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000068238
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NM_014864
Ensembl ENST00000440702ENST00000263733
Entrez Gene Entrez Gene ID:9917
KEGG GENES KEGG GENES(9917)
GeneCard GeneCardFAM20B*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS;  Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:26-Mar-2013
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA250414; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 202915_s_at;  202916_s_at; 
HG-U133A 202915_s_at;  202916_s_at; 
HG-U133A_2 202915_s_at;  202916_s_at; 
HG-U133B NA
HG-U133_Plus_2 202915_s_at;  202916_s_at; 
HG-U95 35318_at; 
HG-U95A 35318_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2369465;  2369469;  2369470;  2369471;  2369472;  2369474;  2369475;  2369477;  2369479;  2369480;  2369481;  2446036;  2446038;  2651759;  4026876; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P103923; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P103923;  A_24_P148043;  A_24_P160649; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:26-Mar-2013
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  270750608526611154
Disease related mutation NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(9917); 
Disease Entrez Gene ID:(9917); 
Gene function Entrez Gene ID:(9917); 
Substance Entrez Gene ID:(9917); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA