H-InvDB x AHG DB
Locus view
H-InvDB_8.3 released on March 26, 2013.
Search by for Advanced Search
Home Quick guide Navi BLAST Site map Download Contact us Help
cDNA viewTranscript view Protein view Protein view G-integraG-integra DiseaseInfo ViewerDiseaseInfo Viewer H-ANGELH-ANGEL EvolaEvola PPI viewerPPI view Gene Family/GroupGene Family/Group Hyperlink managemnet system (All databases)Hyperlink MS
H-Inv cluster ID: HIX0001006 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Synaptic vesicle glycoprotein 2A.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0001006
Genomic location  G-integra Help Chromosome 1
Location 1q21.2
Position 149874873- 149889434
Strand -
Antisense cluster ID(s) NA
Database links RefSeq NM_014849; 
Ensembl ENST00000369145;  ENST00000369146; 
Entrez Gene Entrez Gene ID:9900; 
KEGG GENES KEGG GENES(9900); 
GeneCard GeneCardSV2A;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Cluster member H-Inv ID(s) HIT000000461;  HIT000052919;  HIT000054539;  HIT000093343;  HIT000424515;  HIT000082513;  HIT000085872;  HIT000497785;  HIT000340681;  HIT000386670; 
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 
Mini-G Locus map Locus map

 
TOP 1-10 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000000461
Accession number AB018279.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Synaptic vesicle glycoprotein 2A.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_055664)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol SV2A 
HGNC aliases NA
HGNC name synaptic vesicle glycoprotein 2A 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 1
Location 1q21.2
Position 149874876- 149889377
Strand -
Gene structure 13 exons
 
TOP 1-10 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000052919
Accession number BC045111.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Synaptic vesicle glycoprotein 2A.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_055664)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1q21.2
Position 149875216- 149889380
Strand -
Gene structure 13 exons
 
TOP 1-10 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000054539
Accession number BX537754.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Synaptic vesicle glycoprotein 2A;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q7L0J3)  [Identity/coverage = 99.596%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SV2A 
HGNC aliases NA
HGNC name synaptic vesicle glycoprotein 2A 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1q21.2
Position 149875235- 149889430
Strand -
Gene structure 13 exons
 
TOP 1-10 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000093343
Accession number BC034038.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Synaptic vesicle glycoprotein 2A;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q7L0J3)  [Identity/coverage = 99.596%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SV2A 
HGNC aliases NA
HGNC name synaptic vesicle glycoprotein 2A 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1q21.2
Position 149874873- 149889434
Strand -
Gene structure 13 exons
 
TOP 1-10 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000424515
Accession number AK291718.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Synaptic vesicle glycoprotein 2A;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q7L0J3)  [Identity/coverage = 99.865%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SV2A 
HGNC aliases NA
HGNC name synaptic vesicle glycoprotein 2A 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1q21.2
Position 149876410- 149889383
Strand -
Gene structure 13 exons
 
TOP 1-10 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000082513
Accession number AK075480.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Synaptic vesicle glycoprotein 2A;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q7L0J3)  [Identity/coverage = 99.267%/91.91%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 1
Location 1q21.2
Position 149877024- 149889393
Strand -
Gene structure 12 exons
 
TOP 1-10 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000085872
Accession number BC000776.2
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Synaptic vesicle glycoprotein 2A;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q7L0J3)  [Identity/coverage = 100.0%/81.4%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1q21.2
Position 149875216- 149884978
Strand -
Gene structure 12 exons
 
TOP 1-10 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000497785
Accession number AK303161.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Synaptic vesicle glycoprotein 2A;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q7L0J3)  [Identity/coverage = 100.0%/24.8%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 1
Location 1q21.2
Position 149876255- 149878523
Strand -
Gene structure 3 exons
 
TOP 1-10 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000340681
Accession number BC114453.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1q21.2
Position 149875049- 149875310
Strand -
Gene structure 1 exons
 
TOP 1-10 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000386670
Accession number BC112435.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1q21.2
Position 149875049- 149875310
Strand -
Gene structure 1 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms NA
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000000461;  Splicing isoformHIT000497785;  Splicing isoformHIT000082513; 
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0001006
Representative H-Inv ID Representative H-Inv IDHIT000000461
Accession number AB018279.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Synaptic vesicle glycoprotein 2A.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_055664)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID HIF0001932
Gene family/group name Synaptic vesicle protein SV2 (IPR005988).
Evidence motif (InterPro) ID IPR005988
Gene symbol/name HGNC symbol SV2A 
HGNC aliases NA
HGNC name synaptic vesicle glycoprotein 2A 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000045445
No. of interaction 22
Interaction partner(s) HIP000014859;  HIP000025016;  HIP000025109;  HIP000031586;  HIP000036220;  HIP000036770;  HIP000037809;  HIP000043309;  HIP000047598;  HIP000049801;  HIP000065283;  HIP000067560;  HIP000088169;  HIP000092113;  HIP000094444;  HIP000096367;  HIP000096721;  HIP000101845;  HIP000102288;  HIP000112151;  HIP000435860;  HIP000436453; 
BIND 178241;  178242;  178243; 
DIP 132276E; 
MINT MINT-68560;  MINT-68561;  MINT-68562;  MINT-68563;  MINT-68564;  MINT-68565;  MINT-74487;  MINT-74488; 
HPRD 00082;  00153;  01281;  03554;  03736;  04472;  05502;  05802;  07958;  10257;  11227;  11485;  11543; 
IntAct EBI-847661;  EBI-847631;  EBI-783036;  EBI-783054;  EBI-783025;  EBI-696637;  EBI-1959084;  EBI-782980;  EBI-783010;  EBI-782988; 
Database links RefSeq NM_014849; 
Ensembl ENST00000369145;  ENST00000369146; 
Entrez Gene Entrez Gene ID:9900; 
KEGG GENES KEGG GENES(9900); 
GeneCard GeneCardSV2A;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Related H-InvDB links G-integraG-integra;  PPI viewerPPI view;  H-DBASH-DBAS;  Synaptic vesicle protein SV2 (IPR005988). Similarity Search ToolSimilarity search tool;  TACTTACT; 
Gene expression information   H-ANGEL DNAProbeLocator Last modified:20-Apr-2012
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator		 AceGene AGhsA241422; 
Affymetrix
GeneChip		 HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 NA
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2434140;  2434141;  2434143;  2434145;  2434147;  2434148;  2434149;  2434150;  2434151;  2434152;  2434154;  2434155;  2434156;  2434157; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_24_P131236; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator; 

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  174000;  182269;  601412;  602483;  603935;  605549;  605642;  605833;  607346;  608372;  608781;  611152; 
Disease related mutation NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(9900); 
Disease Entrez Gene ID:(9900); 
Gene function Entrez Gene ID:(9900); 
Substance Entrez Gene ID:(9900); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA;