H-InvDB x AHG DB
Locus view
H-InvDB_9.0 released on May 27, 2015.
Search by for Advanced Search
Home Quick guide Navi BLAST Site map Download Contact us Help
H-Inv cluster ID: HIX0000180 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0000180
Genomic location  G-integra Help Chromosome 1
Location 1p36.13
Position 17393256- 17445948
Strand -
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:11240
KEGG GENES KEGG GENES(11240)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000000711HIT000046879HIT000058986HIT000490407
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-4 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000000711
Accession number AB023211.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9Y2J8)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 1
Location 1p36.13
Position 17393257- 17445930
Strand -
Gene structure 16 exons
 
TOP 1-4 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000046879
Accession number AK127006.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9Y2J8)  [Identity/coverage = 99.369%/47.67%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 1
Location 1p36.13
Position 17394281- 17409921
Strand -
Gene structure 7 exons
 
TOP 1-4 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000058986
Accession number AB030176.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9Y2J8)  [Identity/coverage = 99.85%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1p36.13
Position 17395253- 17445930
Strand -
Gene structure 16 exons
 
TOP 1-4 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000490407
Accession number AK295783.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9Y2J8)  [Identity/coverage = 100.0%/8.42%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 1
Location 1p36.13
Position 17394938- 17445948
Strand -
Gene structure 13 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette;  Internal acceptor site; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000046879Splicing isoformHIT000490407Splicing isoformHIT000000711
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0000180
Representative H-Inv ID Representative H-Inv IDHIT000000711
Accession number AB023211.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9Y2J8)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000075425
No. of interaction 3
Interaction partner(s) HIP000099536HIP000174053HIP000183741
BIND NA
DIP NA
MINT NA
HPRD 01818; 
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:11240
KEGG GENES KEGG GENES(11240)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsB020205; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 209791_at; 
HG-U133A 209791_at; 
HG-U133A_2 209791_at; 
HG-U133B NA
HG-U133_Plus_2 1554385_a_at;  209791_at; 
HG-U95 35674_at; 
HG-U95A 35674_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2398821;  2398822;  2398823;  2398824;  2398825;  2398827;  2398829;  2398832;  2398834;  2398837;  2398838;  2398841;  2398843;  2398844;  2398845;  2398852;  2398853;  2398857;  2398858; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P201747; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P201747;  A_24_P187970;  A_24_P205604; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator