H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Inv cluster ID: HIX0000180 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Protein-arginine deiminase type-2.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0000180
Genomic location  G-integra Help Chromosome 1
Location 1p36.13
Position 17393256- 17445948
Strand -
Antisense cluster ID(s) NA
Database links RefSeq NM_007365; 
Ensembl ENST00000375486;  ENST00000479534;  ENST00000466151;  ENST00000444885;  ENST00000375481; 
Entrez Gene Entrez Gene ID:11240; 
KEGG GENES KEGG GENES(11240); 
GeneCard GeneCardPADI2;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Cluster member H-Inv ID(s) HIT000000711;  HIT000034515;  HIT000046879;  HIT000043037;  HIT000058986;  HIT000490407; 
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 
Mini-G Locus map Locus map

 
TOP 1-6 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000000711
Accession number AB023211.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Protein-arginine deiminase type-2.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_031391)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol PADI2 
HGNC aliases NA
HGNC name peptidyl arginine deiminase, type II 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 1
Location 1p36.13
Position 17393257- 17445930
Strand -
Gene structure 16 exons
 
TOP 1-6 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000034515
Accession number BC009701.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9Y2J8)  [Identity/coverage = 100.0%/65.71%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol PADI2 
HGNC aliases NA
HGNC name peptidyl arginine deiminase, type II 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 1
Location 1p36.13
Position 17405526- 17445930
Strand -
Gene structure 11 exons
 
TOP 1-6 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000046879
Accession number AK127006.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9Y2J8)  [Identity/coverage = 99.369%/47.67%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol PADI2 
HGNC aliases NA
HGNC name peptidyl arginine deiminase, type II 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 1
Location 1p36.13
Position 17394281- 17409921
Strand -
Gene structure 8 exons
 
TOP 1-6 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000043037
Accession number AK123164.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9Y2J8)  [Identity/coverage = 98.895%/27.22%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol PADI2 
HGNC aliases NA
HGNC name peptidyl arginine deiminase, type II 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 1
Location 1p36.13
Position 17394095- 17401846
Strand -
Gene structure 4 exons
 
TOP 1-6 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000058986
Accession number AB030176.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9Y2J8)  [Identity/coverage = 99.699%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol PADI2 
HGNC aliases NA
HGNC name peptidyl arginine deiminase, type II 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1p36.13
Position 17395253- 17445930
Strand -
Gene structure 16 exons
 
TOP 1-6 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000490407
Accession number AK295783.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9Y2J8)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol PADI2 
HGNC aliases NA
HGNC name peptidyl arginine deiminase, type II 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 1
Location 1p36.13
Position 17394938- 17445948
Strand -
Gene structure 13 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette;  Internal acceptor site; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000034515;  Splicing isoformHIT000043037;  Splicing isoformHIT000046879;  Splicing isoformHIT000490407;  Splicing isoformHIT000000711; 
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0000180
Representative H-Inv ID Representative H-Inv IDHIT000000711
Accession number AB023211.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Protein-arginine deiminase type-2.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_031391)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID HIF0000651
Gene family/group name Protein-arginine deiminase, subgroup (IPR016296).
Evidence motif (InterPro) ID IPR016296
Gene symbol/name HGNC symbol PADI2 
HGNC aliases NA
HGNC name peptidyl arginine deiminase, type II 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000075425
No. of interaction 3
Interaction partner(s) HIP000099536;  HIP000174053;  HIP000183741; 
BIND NA
DIP NA
MINT NA
HPRD 01242; 
IntAct EBI-776423;  EBI-4282570;  EBI-4284701; 
Database links RefSeq NM_007365; 
Ensembl ENST00000375486;  ENST00000479534;  ENST00000466151;  ENST00000444885;  ENST00000375481; 
Entrez Gene Entrez Gene ID:11240; 
KEGG GENES KEGG GENES(11240); 
GeneCard GeneCardPADI2;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Related H-InvDB links G-integraG-integra;  PPI viewerPPI view;  H-DBASH-DBAS;  Protein-arginine deiminase, subgroup (IPR016296). Similarity Search ToolSimilarity search tool;  TACTTACT; 
Gene expression information   H-ANGEL DNAProbeLocator Last modified:20-Apr-2012
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator		 AceGene AGhsB020205; 
Affymetrix
GeneChip		 HG-Focus NA
HG-U133 209791_at; 
HG-U133A 209791_at; 
HG-U133A_2 209791_at; 
HG-U133B NA
HG-U133_Plus_2 1554385_a_at;  209791_at; 
HG-U95 35674_at; 
HG-U95A 35674_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2398821;  2398822;  2398823;  2398824;  2398825;  2398827;  2398829;  2398832;  2398834;  2398837;  2398838;  2398841;  2398843;  2398844;  2398845;  2398852;  2398853;  2398857;  2398858; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P201747; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P201747;  A_24_P187970;  A_24_P205604; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator; 

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  115665;  116600;  155600;  600975;  605225;  605606;  606788;  606852;  606928;  607317;  607671;  608543;  608553;  608995;  609122;  610320;  612367;  612596; 
Disease related mutation NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(11240); 
Disease Entrez Gene ID:(11240); 
Gene function Entrez Gene ID:(11240); 
Substance Entrez Gene ID:(11240); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA;