H-InvDB x AHG DB
Protein view
H-InvDB_9.0 released on May 27, 2015.
Search by for Advanced Search
ホーム クイックガイド 検索ナビ BLAST サイトマップ データダウンロード 問い合わせ ヘルプ
H-Inv protein ID: HIP000057535 Last modified: 27-May-2015
Definition: Visinin-like protein 1; VILIP; VLP-1; Hippocalcin-like protein 3; HLP3;
[Summery][Full]
[Protein Info][Member][Motif] 
provide location, ID and descriptions of functional motifs (InterPro)[Function] 
provide human-curated functional definition, similarity
category and related evidences;  Gene name; 
HUGO gene symbols; GO term; EC number; pathway information (KEGG)[PTM][Subcellular loc.] 
provide subcellular localization prediction by WolfPSORT, Target P, SOSUI, TMHMM and PTS1[Protein Structure][Evolutionary info.] 
provide orthologs relationships, phylogenic trees and sequence alignments[Polymorphism/repeat] 
provide polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Protein information
HIP ID HIP000057535
Length 191
Codon Adaptation Index (CAI). 0.851
Database links RefSeq NA
UniProt NA
CCDS NA
Original transcript information
Representative H-Inv transcript ID Transcript view HIT000057941
H-Inv cluster ID Locus view HIX0001844
Predicted CDS 140..715 ; 191[aa] ; Orientation:+2 ;
Genomic location Chromosome 2
Location 2p24.2
CDS position 17722058-17836878
Strand +
Accession number AB001104.1
CAGE tag ID NA
EST ID NA
Clone Number NA
Experimental resources NBRC: NITE Biological Resource Center NBRC     Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (VSNL1) ;   Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (VSNL1) ;
Length of cDNA 943[bp] (No. of exon:4)[A:303 T:220 G:218 C:202] ;
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:7447 ;
KEGG GENES KEGG GENES(7447) ;
GeneCard GeneCard VSNL1 ;
etc H-GOLD Human-Gene diversity Of Life-style related Diseases ;
Protein view


Coresponding transcript member (s)
No.1
H-Inv IDTranscript view HIT000057941
H-Inv cluster IDLocus view HIX0001844
Accession numberAB001104.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionVisinin-like protein 1; VILIP; VLP-1; Hippocalcin-like protein 3; HLP3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P62760) [Identity/coverage = 98.953%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome2
Location2p24.2
CDS position17722058-17836878
Strand+
Gene structure4 exons

Motif information in predicted CDS
ORF

length(192),orf(140:715)
MGKQNSKLAPEVMEDLVKSTEFNEHELKQWYKGFLKDCPSGRLNLEEFQQ
LYVKFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSITSRGSFEQK
LNWAFNMYDLDGDGKITRVEMLEIIEAIYKMVGTVIMMKKNEDGLTPEQR
VDKIFSKKDKNKDDQITLDEFKEAAKSDPSIVLLLQCDIQK*
a.a.
length
InterPro Name
length(191), motif(1:191) 191IPR028846Recoverin family [Family]
length(69), motif(12:80) 69IPR011992EF-hand domain pair [Domain]
length(19), motif(40:58) 19IPR002048EF-hand domain [Domain]
length(36), motif(60:95) 36IPR002048EF-hand domain [Domain]
length(29), motif(64:92) 29IPR002048EF-hand domain [Domain]
length(25), motif(66:90) 25IPR002048EF-hand domain [Domain]
length(13), motif(73:85) 13IPR018247EF-Hand 1, calcium-binding site [Binding_site]
length(33), motif(81:113) 33IPR011992EF-hand domain pair [Domain]
length(36), motif(96:131) 36IPR002048EF-hand domain [Domain]
length(29), motif(100:128) 29IPR002048EF-hand domain [Domain]
length(74), motif(101:174) 74IPR011992EF-hand domain pair [Domain]
length(13), motif(109:121) 13IPR018247EF-Hand 1, calcium-binding site [Binding_site]
length(75), motif(114:188) 75IPR011992EF-hand domain pair [Domain]
length(36), motif(146:181) 36IPR002048EF-hand domain [Domain]
length(29), motif(150:178) 29IPR002048EF-hand domain [Domain]
length(13), motif(159:171) 13IPR018247EF-Hand 1, calcium-binding site [Binding_site]

Protein function information
H-Inv protein ID HIP000057535
Representative H-Inv transcript ID Transcript view HIT000057941
H-Inv cluster ID Locus view HIX0001844
Definition Visinin-like protein 1; VILIP; VLP-1; Hippocalcin-like protein 3; HLP3;
Similarity category Help Identical to known human protein(Category I).
Identical to known human protein (P62760) [Identity/coverage = 98.953%/100.0%] to Homo sapiens (Human). protein.
Gene family/group H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
EC number NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer No. of interaction 484
Interaction partner(s) HIP000000390; HIP000003459; HIP000004881; HIP000009957; HIP000013983; HIP000020436; HIP000021200; HIP000021255; HIP000021335; HIP000021401; HIP000021647; HIP000021661; HIP000021684; HIP000021704; HIP000021803; HIP000021834; HIP000021984; HIP000022009; HIP000022077; HIP000022190; HIP000022231; HIP000022251; HIP000022280; HIP000022363; HIP000022390; HIP000022399; HIP000022653; HIP000022710; HIP000023088; HIP000023126; HIP000023348; HIP000023494; HIP000023516; HIP000023574; HIP000023757; HIP000023875; HIP000024071; HIP000024164; HIP000024283; HIP000024512; HIP000024546; HIP000024994; HIP000025001; HIP000025067; HIP000025096; HIP000025121; HIP000025285; HIP000025579; HIP000025697; HIP000025749; HIP000025881; HIP000026040; HIP000026118; HIP000026195; HIP000026239; HIP000026519; HIP000026863; HIP000027204; HIP000027260; HIP000027440; HIP000027491; HIP000027587; HIP000027724; HIP000027741; HIP000027766; HIP000027796; HIP000028009; HIP000028438; HIP000028618; HIP000028936; HIP000028948; HIP000029022; HIP000029071; HIP000029383; HIP000029497; HIP000029584; HIP000029725; HIP000030165; HIP000030803; HIP000030841; HIP000030939; HIP000031239; HIP000031280; HIP000031648; HIP000031866; HIP000032591; HIP000032591; HIP000032727; HIP000032846; HIP000032894; HIP000032948; HIP000033010; HIP000033011; HIP000033091; HIP000033231; HIP000033413; HIP000033461; HIP000033539; HIP000033785; HIP000033868; HIP000033931; HIP000034443; HIP000034956; HIP000034960; HIP000035000; HIP000035147; HIP000035223; HIP000035365; HIP000035692; HIP000035761; HIP000035845; HIP000035852; HIP000036030; HIP000036034; HIP000036064; HIP000036187; HIP000036625; HIP000036644; HIP000036681; HIP000036725; HIP000037520; HIP000037856; HIP000039118; HIP000039355; HIP000039398; HIP000039429; HIP000039484; HIP000039538; HIP000039653; HIP000039660; HIP000039669; HIP000039778; HIP000039930; HIP000039965; HIP000040678; HIP000040680; HIP000040793; HIP000040806; HIP000040854; HIP000041271; HIP000041437; HIP000041686; HIP000041732; HIP000041778; HIP000041902; HIP000042178; HIP000042326; HIP000042380; HIP000042495; HIP000042847; HIP000042868; HIP000042878; HIP000043397; HIP000043635; HIP000043809; HIP000043813; HIP000044120; HIP000044247; HIP000044548; HIP000044598; HIP000044660; HIP000045068; HIP000045122; HIP000045142; HIP000045337; HIP000045519; HIP000045697; HIP000045699; HIP000046314; HIP000046852; HIP000047422; HIP000047573; HIP000047881; HIP000047957; HIP000048044; HIP000048842; HIP000048856; HIP000048878; HIP000048949; HIP000049555; HIP000049555; HIP000050055; HIP000050069; HIP000050523; HIP000051002; HIP000051356; HIP000051442; HIP000051907; HIP000052004; HIP000052086; HIP000052122; HIP000052316; HIP000052847; HIP000052853; HIP000052957; HIP000053726; HIP000053999; HIP000054168; HIP000054389; HIP000054508; HIP000054593; HIP000054608; HIP000054876; HIP000055075; HIP000055150; HIP000055399; HIP000055602; HIP000055792; HIP000056003; HIP000056817; HIP000057151; HIP000057226; HIP000057276; HIP000057542; HIP000058028; HIP000058157; HIP000058193; HIP000058530; HIP000058641; HIP000058705; HIP000058809; HIP000058853; HIP000059153; HIP000059239; HIP000059928; HIP000059951; HIP000060400; HIP000060782; HIP000061278; HIP000061387; HIP000061780; HIP000061803; HIP000061860; HIP000062007; HIP000063650; HIP000063688; HIP000063736; HIP000063967; HIP000064456; HIP000065259; HIP000066049; HIP000066197; HIP000066454; HIP000066649; HIP000066777; HIP000067641; HIP000068776; HIP000069500; HIP000069525; HIP000069661; HIP000069850; HIP000070142; HIP000072352; HIP000072404; HIP000072532; HIP000073473; HIP000074222; HIP000074361; HIP000074513; HIP000074703; HIP000075345; HIP000075580; HIP000075883; HIP000076146; HIP000076448; HIP000076519; HIP000076804; HIP000076815; HIP000077005; HIP000077283; HIP000077716; HIP000077771; HIP000077860; HIP000077884; HIP000078197; HIP000078543; HIP000078711; HIP000078803; HIP000079462; HIP000080319; HIP000080449; HIP000081280; HIP000081323; HIP000081392; HIP000081662; HIP000081682; HIP000081797; HIP000081838; HIP000082249; HIP000082794; HIP000082842; HIP000083133; HIP000083176; HIP000083279; HIP000083362; HIP000083424; HIP000083506; HIP000083667; HIP000083805; HIP000084148; HIP000084262; HIP000084345; HIP000084461; HIP000084496; HIP000084547; HIP000085571; HIP000085801; HIP000085949; HIP000085991; HIP000086068; HIP000086416; HIP000086749; HIP000087012; HIP000087410; HIP000087804; HIP000088283; HIP000088671; HIP000089031; HIP000089868; HIP000090113; HIP000090291; HIP000090509; HIP000090723; HIP000090938; HIP000091231; HIP000091335; HIP000091590; HIP000091632; HIP000092099; HIP000092512; HIP000092689; HIP000092844; HIP000092945; HIP000093681; HIP000094365; HIP000094558; HIP000094907; HIP000095236; HIP000095972; HIP000096010; HIP000096122; HIP000096582; HIP000096669; HIP000096730; HIP000096868; HIP000097041; HIP000097117; HIP000097194; HIP000097197; HIP000097242; HIP000097281; HIP000097471; HIP000097726; HIP000097834; HIP000097882; HIP000097970; HIP000098105; HIP000098131; HIP000098348; HIP000098402; HIP000098409; HIP000098615; HIP000098618; HIP000099058; HIP000099330; HIP000099410; HIP000099447; HIP000099536; HIP000099613; HIP000099647; HIP000099754; HIP000100321; HIP000100779; HIP000100847; HIP000100860; HIP000101327; HIP000101465; HIP000101550; HIP000101886; HIP000102359; HIP000102571; HIP000102595; HIP000102812; HIP000102882; HIP000103026; HIP000103186; HIP000103333; HIP000103900; HIP000103953; HIP000104016; HIP000104016; HIP000104077; HIP000104149; HIP000104706; HIP000104953; HIP000104980; HIP000105245; HIP000105281; HIP000105366; HIP000105584; HIP000106015; HIP000106047; HIP000106047; HIP000106127; HIP000106251; HIP000106943; HIP000108262; HIP000108540; HIP000108582; HIP000109249; HIP000109313; HIP000109499; HIP000109499; HIP000109530; HIP000109916; HIP000110189; HIP000110202; HIP000110465; HIP000110588; HIP000110634; HIP000110859; HIP000111693; HIP000111788; HIP000111967; HIP000111975; HIP000112094; HIP000112147; HIP000112213; HIP000112312; HIP000112664; HIP000113430; HIP000113922; HIP000114133; HIP000114190; HIP000114568; HIP000114669; HIP000115055; HIP000115133; HIP000115199; HIP000115414; HIP000115656; HIP000115672; HIP000130695; HIP000131491; HIP000137744; HIP000141985; HIP000144233; HIP000147161; HIP000148976; HIP000150678; HIP000161979; HIP000166161; HIP000166793; HIP000167105; HIP000174774; HIP000175302; HIP000178686; HIP000181749; HIP000182099; HIP000192131; HIP000192469; HIP000192588; HIP000199130; HIP000200011; HIP000204439; HIP000216634; HIP000226430; HIP000237175; HIP000251215; HIP000255479; HIP000256948; HIP000258186; HIP000259706; HIP000337171; HIP000338705; HIP000349620; HIP000357244; HIP000359334; HIP000359365; HIP000359365; HIP000360224; HIP000381874; HIP000435729; HIP000435775;
BIND NA
DIP 111813E; 111862E;
MINT MINT-2864086; MINT-2864105; MINT-66129;
HPRD 00017; 00032; 00333; 03333; 05088; 08779; 16841;
IntAct NA
Database links RefSeq NA
UniProt NA
CCDS NA
Gene symbol/name HGNC symbol VSNL1
HGNC aliases NA
HGNC name visinin-like 1;
Related H-InvDB links G-integraG-integra ; PPI viewer PPI view ; TACT TACT ;

Glycosylation
GPDB (GlycoProtDB)
GPDB
ID NA
Protein name NA
Organism NA
Length(aa) NA

Subcellular localization information
WoLF PSORT cytosol;
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified : 27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
5 187 1bjfA 2e-25 67.4 181/181 a.39.1.5
Related H-InvDB links GTOP GTOP

Translation polymorphism (SNP) and microsatellite (STR) information

Single Nucleotide Polymorphism (SNP) and indel VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
181..181 G/C rs201755586 + CDS Nonsynonymous[Glu14Asp]
187..187 G/A rs11547469 + CDS Synonymous[Leu16Leu]
244..244 C/T rs1802175 + CDS Synonymous[Leu35Leu]
319..319 C/T rs148418595 + CDS Synonymous[Asp60Asp]
333..333 C/G rs1042674 + CDS Nonsynonymous[Ala65Gly]
334..334 C/T rs188834016 + CDS Synonymous[Ala65Ala]
412..412 C/T rs11547470 + CDS Synonymous[Ile91Ile]
422..422 G/A rs11547472 + CDS Nonsynonymous[Gly95Ser]
587..587 C/A rs146113368 + CDS Synonymous[Arg150Arg]
641..641 C/A rs143934529 + CDS Nonsynonymous[Leu168Met]
654..654 A/G rs1042685 + CDS Nonsynonymous[Lys172Arg]
658..658 A/G rs143782653 + CDS Synonymous[Glu173Glu]
Microsatellite (Short Tandem Repeat, STR)
LocationVariationStrand
No data available
Related H-InvDB links
VaryGeneVaryGene ;