bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
T.nigroviridis
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
CR725598
Representative transcript
genome : 49,647,374 - 49,648,919 (1,546)
query : 1 - 1,105 (1,105/1,105)
4 exons
identity = 0.955
5'(0.939)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
GSTENT00013748001
genome : 49,647,377 - 49,648,919 (1,543)
query : 1 - 1,098 (1,098/1,098)
4 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
GSTENT00013747001
genome : 49,649,778 - 49,652,847 (3,070)
query : 1 - 1,161 (1,161/1,161)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
CR686567
genome : 49,649,778 - 49,652,835 (3,058)
query : 1 - 1,146 (1,146/1,146)
6 exons
identity = 0.987
5'(0.952;0.982;1.000;0.989;1.000;0.992)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR701769
genome : 49,649,778 - 49,652,833 (3,056)
query : 1 - 1,147 (1,147/1,147)
6 exons
identity = 0.987
5'(0.964;0.994;1.000;1.000;0.995;0.981)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR695303
genome : 49,649,781 - 49,652,837 (3,057)
query : 1 - 1,145 (1,145/1,145)
6 exons
identity = 0.988
5'(0.970;0.988;1.000;1.000;1.000;0.981)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR684197
Representative transcript
genome : 49,649,784 - 49,652,844 (3,061)
query : 1 - 1,149 (1,149/1,149)
6 exons
identity = 0.983
5'(0.950;0.994;1.000;1.000;1.000;0.971)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR696648
genome : 49,649,788 - 49,652,834 (3,047)
query : 1 - 1,136 (1,136/1,136)
6 exons
identity = 0.996
5'(0.981;1.000;0.994;1.000;1.000;1.000)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR686284
genome : 49,649,797 - 49,652,840 (3,044)
query : 1 - 1,133 (1,133/1,133)
6 exons
identity = 0.980
5'(0.973;0.975;1.000;1.000;1.000;0.960)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR682089
genome : 49,649,797 - 49,652,837 (3,041)
query : 1 - 1,131 (1,131/1,131)
6 exons
identity = 0.993
5'(0.986;0.988;1.000;1.000;1.000;0.989)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR690803
genome : 49,649,799 - 49,652,832 (3,034)
query : 1 - 1,123 (1,123/1,123)
6 exons
identity = 0.998
5'(0.986;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR682199
genome : 49,649,802 - 49,652,844 (3,043)
query : 1 - 1,133 (1,133/1,133)
6 exons
identity = 0.997
5'(0.993;1.000;1.000;1.000;1.000;0.995)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR701834
genome : 49,649,802 - 49,652,825 (3,024)
query : 1 - 1,114 (1,114/1,114)
6 exons
identity = 0.999
5'(0.993;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR690044
genome : 49,649,809 - 49,652,844 (3,036)
query : 1 - 1,126 (1,126/1,126)
6 exons
identity = 0.980
5'(0.970;0.988;0.989;0.979;0.984;0.973)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR686555
genome : 49,649,810 - 49,652,847 (3,038)
query : 1 - 1,128 (1,128/1,128)
6 exons
identity = 0.989
5'(0.970;0.988;0.994;1.000;1.000;0.987)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR686942
genome : 49,649,811 - 49,652,837 (3,027)
query : 1 - 1,119 (1,119/1,119)
6 exons
identity = 0.989
5'(0.970;0.988;1.000;1.000;1.000;0.984)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
GSTENT00002877001
genome : 49,649,847 - 49,649,942 (96)
query : 1 - 96 (96/96)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
CR693953
genome : 49,649,862 - 49,652,825 (2,964)
query : 1 - 1,055 (1,055/1,055)
6 exons
identity = 0.993
5'(1.000;0.988;1.000;1.000;1.000;0.986)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR697173
genome : 49,651,656 - 49,652,844 (1,189)
query : 1 - 1,002 (1,002/1,002)
3 exons
identity = 0.986
5'(1.000;0.993;0.973)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
GSTENT00013746001
Representative transcript
genome : 49,653,268 - 49,654,842 (1,575)
query : 1 - 1,376 (1,376/1,376)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000014155
Pan
sp. (Chimpanzee) : XM_001154763
Pongo
sp. (Orangutan) : ENSPPYT00000001372
Macaca
sp. (Macaque) : XM_001101928
Mus
sp. (Mouse) : AK075713
Rattus
sp. (Rat) : BC083822
Canis
sp. (Dog) : XM_537068
Equus
sp. (Horse) : ENSECAT00000010453
Bos
sp. (Cow) : BC105564
Monodelphis
sp. (Opossum) : XM_001371981
Gallus
sp. (Chicken) : AJ719281
Danio
sp. (Zebrafish) : BC124605
Oryzias
sp. (Medaka) : ENSORLT00000017207
Takifugu
sp. (Fugu) : SINFRUT00000136643
GSTENT00013745001
Representative transcript
genome : 49,655,440 - 49,657,956 (2,517)
query : 1 - 975 (975/975)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000081196
Pan
sp. (Chimpanzee) : XM_001173530
Pongo
sp. (Orangutan) : ENSPPYT00000001732
Macaca
sp. (Macaque) : AB097545
Mus
sp. (Mouse) : AK005422
Rattus
sp. (Rat) : XM_001072348
Equus
sp. (Horse) : ENSECAT00000010905
Monodelphis
sp. (Opossum) : ENSMODT00000014410
Gallus
sp. (Chicken) : BX934369
Danio
sp. (Zebrafish) : ENSDART00000100316
Oryzias
sp. (Medaka) : ENSORLT00000017798
Takifugu
sp. (Fugu) : SINFRUT00000142153
GSTENT00013744001
genome : 49,658,988 - 49,661,769 (2,782)
query : 1 - 1,252 (1,252/1,252)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
CR683459
genome : 49,658,988 - 49,661,106 (2,119)
query : 1 - 1,036 (1,036/1,036)
6 exons
identity = 0.970
3'(0.995;0.960;0.985;1.000;0.790;0.840)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR682644
Representative transcript
genome : 49,659,140 - 49,661,746 (2,607)
query : 1 - 1,080 (1,080/1,080)
7 exons
identity = 0.985
3'(0.980;1.000;1.000;1.000;0.984;1.000;0.971)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000280639
Pan
sp. (Chimpanzee) : XM_524948
Pongo
sp. (Orangutan) : CR859479
Macaca
sp. (Macaque) : AB171206
Mus
sp. (Mouse) : AK037709
Rattus
sp. (Rat) : BC088319
Canis
sp. (Dog) : XM_549626
Equus
sp. (Horse) : XM_001493591
Bos
sp. (Cow) : BC102321
Monodelphis
sp. (Opossum) : XM_001370561
Gallus
sp. (Chicken) : CR354114
Danio
sp. (Zebrafish) : BC152265
Takifugu
sp. (Fugu) : SINFRUT00000142154
CR675983
genome : 49,659,140 - 49,661,672 (2,533)
query : 1 - 1,005 (1,005/1,005)
7 exons
identity = 0.985
3'(0.978;1.000;1.000;1.000;0.984;1.000;0.970)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR705540
genome : 49,659,176 - 49,661,698 (2,523)
query : 1 - 996 (996/996)
7 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;0.984;1.000;0.992)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR709272
genome : 49,659,176 - 49,661,698 (2,523)
query : 1 - 996 (996/996)
7 exons
identity = 0.996
3'(0.996;1.000;1.000;1.000;0.984;1.000;0.992)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR701548
genome : 49,659,194 - 49,661,725 (2,532)
query : 1 - 1,005 (1,005/1,005)
7 exons
identity = 0.982
3'(0.971;1.000;0.985;1.000;0.984;1.000;0.980)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR649287
genome : 49,659,417 - 49,661,700 (2,284)
query : 1 - 758 (758/758)
7 exons
identity = 0.992
3'(0.991;1.000;1.000;1.000;0.968;1.000;0.984)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR697654
genome : 49,659,424 - 49,660,692 (1,269)
query : 1 - 432 (432/432)
3 exons
identity = 0.995
3'(0.996;1.000;0.984)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR656755
genome : 49,659,425 - 49,661,753 (2,329)
query : 1 - 802 (802/802)
7 exons
identity = 0.994
3'(0.996;1.000;1.000;1.000;0.984;1.000;0.983)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR660497
genome : 49,659,427 - 49,661,769 (2,343)
query : 1 - 816 (816/816)
7 exons
identity = 0.993
3'(0.995;1.000;1.000;1.000;0.984;1.000;0.980)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR680413
genome : 49,659,456 - 49,661,715 (2,260)
query : 1 - 733 (733/733)
7 exons
identity = 0.985
3'(0.984;1.000;0.985;0.979;0.984;1.000;0.965)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
GSTENT00013743001
genome : 49,662,385 - 49,664,188 (1,804)
query : 1 - 626 (626/626)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
CR676909
Representative transcript
genome : 49,662,394 - 49,664,241 (1,848)
query : 1 - 671 (671/671)
5 exons
identity = 0.979
5'(0.995;0.949;0.955;0.988;0.983)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000005994
Pan
sp. (Chimpanzee) : XM_520743
Pan
sp. (Chimpanzee) : XM_001136983
Pongo
sp. (Orangutan) : ENSPPYT00000005075
Macaca
sp. (Macaque) : AB170851
Mus
sp. (Mouse) : AK008200
Rattus
sp. (Rat) : XM_001069775
Canis
sp. (Dog) : XM_534889
Equus
sp. (Horse) : XM_001500233
Equus
sp. (Horse) : XM_001500320
Bos
sp. (Cow) : BC120291
Monodelphis
sp. (Opossum) : ENSMODT00000000565
Gallus
sp. (Chicken) : AF383945
Danio
sp. (Zebrafish) : BC093273
Oryzias
sp. (Medaka) : ENSORLT00000017123
Takifugu
sp. (Fugu) : SINFRUT00000142158
CR706410
genome : 49,662,405 - 49,664,241 (1,837)
query : 1 - 659 (659/659)
5 exons
identity = 0.992
5'(0.994;1.000;0.973;0.988;1.000)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR715037
genome : 49,662,405 - 49,664,241 (1,837)
query : 1 - 659 (659/659)
5 exons
identity = 0.994
5'(0.994;1.000;0.982;1.000;0.996)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR717279
genome : 49,662,405 - 49,664,239 (1,835)
query : 1 - 657 (657/657)
5 exons
identity = 0.995
5'(1.000;1.000;0.982;1.000;0.996)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR722579
genome : 49,662,406 - 49,664,239 (1,834)
query : 1 - 657 (657/657)
5 exons
identity = 0.970
5'(0.959;0.966;0.955;0.988;0.979)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR706592
genome : 49,662,413 - 49,664,241 (1,829)
query : 1 - 651 (651/651)
5 exons
identity = 0.995
5'(1.000;1.000;0.973;1.000;1.000)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
CR708190
genome : 49,662,497 - 49,664,240 (1,744)
query : 1 - 566 (566/566)
5 exons
identity = 0.996
5'(1.000;1.000;0.982;1.000;1.000)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
GSTENT00013742001
genome : 49,664,198 - 49,667,028 (2,831)
query : 1 - 2,192 (2,192/2,192)
5 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
CR708598
Representative transcript
genome : 49,664,198 - 49,666,312 (2,115)
query : 1 - 861 (861/861)
2 exons
identity = 0.999
3'(0.998)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
SCAF14488
49648698-49664697 W -
(AGGGGG)n
(CTGGGG)n
(TG)n
AT_rich
(TG)n
(CAAGT)n
(GAGTG)n
(TTAGGG)n
(TTAGGG)n
CT-rich
(CA)n
(GAA)n
(GAA)n
(TGGG)n