bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
R.norvegicus
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
BC129116
Representative transcript
genome : 9,761,889 - 9,777,528 (15,640)
query : 16 - 2,947 (2,932/2,981)
8 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.995
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000000357
Pan
sp. (Chimpanzee) : XM_519233
Pongo
sp. (Orangutan) : CR860641
Macaca
sp. (Macaque) : XM_001111767
Mus
sp. (Mouse) : AK151064
Canis
sp. (Dog) : XM_546978
Equus
sp. (Horse) : XM_001494846
Bos
sp. (Cow) : ENSBTAT00000027241
Monodelphis
sp. (Opossum) : ENSMODT00000001662
Gallus
sp. (Chicken) : CR390934
Danio
sp. (Zebrafish) : XM_693706
Oryzias
sp. (Medaka) : ENSORLT00000011636
Tetraodon
sp. (Tetraodon) : GSTENT00015747001
Takifugu
sp. (Fugu) : SINFRUT00000134930
ENSRNOT00000001306
genome : 9,761,916 - 9,776,684 (14,769)
query : 1 - 2,061 (2,061/2,061)
8 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
BC058456
Representative transcript
genome : 9,776,935 - 9,784,369 (7,435)
query : 2 - 835 (834/865)
6 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.979)5'
coverage = 0.998
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000337820
Pan
sp. (Chimpanzee) : XM_001138119
Pongo
sp. (Orangutan) : ENSPPYT00000020238
Macaca
sp. (Macaque) : XM_001111727
Mus
sp. (Mouse) : BC006861
Canis
sp. (Dog) : XM_855762
Equus
sp. (Horse) : XM_001494750
Bos
sp. (Cow) : BC142096
Monodelphis
sp. (Opossum) : XM_001370008
Gallus
sp. (Chicken) : BX934490
Danio
sp. (Zebrafish) : BC092952
Oryzias
sp. (Medaka) : ENSORLT00000017316
Tetraodon
sp. (Tetraodon) : CR718385
Takifugu
sp. (Fugu) : SINFRUT00000135999
AF058791
genome : 9,776,932 - 9,783,490 (6,559)
query : 10 - 811 (802/816)
5 exons
identity = 0.990
3'(0.988;1.000;1.000;1.000;0.967)5'
coverage = 0.983
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
NM_053556
genome : 9,776,932 - 9,783,490 (6,559)
query : 10 - 811 (802/816)
5 exons
identity = 0.990
3'(0.988;1.000;1.000;1.000;0.967)5'
coverage = 0.983
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSRNOT00000040234
genome : 9,776,933 - 9,783,490 (6,558)
query : 1 - 679 (679/679)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSRNOT00000001307
genome : 9,776,935 - 9,784,369 (7,435)
query : 1 - 834 (834/834)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
U41744
genome : 9,784,733 - 9,794,510 (9,778)
query : 6 - 777 (772/787)
6 exons
identity = 0.979
5'(0.875;0.978)3'
coverage = 0.981
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
BC088140
Representative transcript
genome : 9,784,730 - 9,794,971 (10,242)
query : 1 - 1,235 (1,235/1,261)
6 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000029833
Pan
sp. (Chimpanzee) : XM_001137719
Pongo
sp. (Orangutan) : ENSPPYT00000020237
Macaca
sp. (Macaque) : XM_001094158
Mus
sp. (Mouse) : AK147170
Canis
sp. (Dog) : XM_546979
Equus
sp. (Horse) : ENSECAT00000026290
Bos
sp. (Cow) : ENSBTAT00000037136
Monodelphis
sp. (Opossum) : XM_001369983
Gallus
sp. (Chicken) : XM_414797
Danio
sp. (Zebrafish) : BC045997
Oryzias
sp. (Medaka) : ENSORLT00000017301
Tetraodon
sp. (Tetraodon) : CR671209
Takifugu
sp. (Fugu) : SINFRUT00000135998
NM_022595
genome : 9,784,744 - 9,794,971 (10,228)
query : 1 - 1,220 (1,220/1,220)
6 exons
identity = 0.997
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
U26541
genome : 9,784,744 - 9,794,971 (10,228)
query : 1 - 1,220 (1,220/1,220)
6 exons
identity = 0.997
5'(1.000;1.000)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
ENSRNOT00000001310
genome : 9,787,949 - 9,794,323 (6,375)
query : 1 - 546 (546/546)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
AABR03082256.1
9772652-9788651 W +
(GTTTG)n
B1_Mur4
ID_B1
ID_Rn2
(GA)n
PB1D10
ID_B1
RLTR25A
B1_Rn
B4A
B1_Rn
ID_B1
ID_B1
B1F
B1_Rn
B1_Mur1
(CA)n
(TC)n
ID_Rn1
PB1D10
RSINE1
L1M4
B3
ID_Rn1
B2_Rat4
AT_rich
RSINE1
MTE2a
B3
B2_Rat2
MTE2a
B3A
PB1D9
B2_Rat1
ID_B1
(A)n
MIR
GC_rich
MIR
MIRb
T-rich
B3
B1F