bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
R.norvegicus
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_001078867
Representative transcript
genome : 46,722,131 - 46,726,000 (3,870)
query : 1 - 1,572 (1,572/1,572)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000081563_03
Pongo
sp. (Orangutan) : ENSPPYT00000023407
Macaca
sp. (Macaque) : XR_014168
Mus
sp. (Mouse) : AK144812
Canis
sp. (Dog) : XM_845818
Monodelphis
sp. (Opossum) : XM_001365342
Gallus
sp. (Chicken) : XM_416868
Danio
sp. (Zebrafish) : BC122379
Oryzias
sp. (Medaka) : ENSORLT00000020118
Tetraodon
sp. (Tetraodon) : CR733699
Takifugu
sp. (Fugu) : SINFRUT00000165617
XM_344118
genome : 46,722,131 - 46,726,000 (3,870)
query : 1 - 1,572 (1,572/1,572)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSRNOT00000056632
genome : 46,722,131 - 46,725,970 (3,840)
query : 1 - 1,542 (1,542/1,542)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001080726
Representative transcript
genome : 46,726,350 - 46,729,517 (3,168)
query : 1 - 1,323 (1,323/1,323)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000004659_03
Pongo
sp. (Orangutan) : ENSPPYT00000023406
Mus
sp. (Mouse) : BC039627
Canis
sp. (Dog) : XM_845789
Equus
sp. (Horse) : XM_001916767
Bos
sp. (Cow) : ENSBTAT00000015443
Bos
sp. (Cow) : ENSBTAT00000049627
Monodelphis
sp. (Opossum) : ENSMODT00000000419
Gallus
sp. (Chicken) : AJ720680
Danio
sp. (Zebrafish) : XM_001923766
Danio
sp. (Zebrafish) : XM_001920240
Danio
sp. (Zebrafish) : XM_001921295
Danio
sp. (Zebrafish) : XM_686850
Oryzias
sp. (Medaka) : ENSORLT00000020102
Oryzias
sp. (Medaka) : ENSORLT00000020113
Tetraodon
sp. (Tetraodon) : CR649481
Tetraodon
sp. (Tetraodon) : GSTENT00011074001
Tetraodon
sp. (Tetraodon) : GSTENT00020146001
Takifugu
sp. (Fugu) : SINFRUT00000135050
XM_222258
genome : 46,726,350 - 46,729,517 (3,168)
query : 1 - 1,323 (1,323/1,323)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSRNOT00000056627
genome : 46,726,350 - 46,728,825 (2,476)
query : 23 - 966 (944/966)
6 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;0.980)5'
coverage = 0.977
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
AABR03082146.1
46716065-46732064 W +
B1F2
B4A
RLTR14
ID_Rn1
RMER2
RMER2
B3
BC1_Rn
CT-rich
B1_Rn
B4
MER92B
C-rich
B3
B2_Rat2
ID_Rn2
(TG)n
(CGTG)n
(CCCCG)n
C-rich
(CA)n
(CCCCAG)n
RLTR22_Rat2
MT2A
RMER10B
GA-rich
RMER10A
B2_Rat2