bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
R.norvegicus
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
X56085
genome : 2,959,171 - 2,959,501 (331)
query : 1 - 331 (331/331)
1 exon
identity = 0.994
5'(0.994)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
BC061563
genome : 2,959,383 - 2,980,544 (21,162)
query : 5 - 2,361 (2,357/2,549)
6 exons
identity = 1.000
5'(0.996;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
NM_013008
genome : 2,959,383 - 2,980,544 (21,162)
query : 5 - 2,361 (2,357/2,549)
6 exons
identity = 1.000
5'(0.996;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSRNOT00000000905
genome : 2,959,383 - 2,980,547 (21,165)
query : 1 - 2,438 (2,438/2,438)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
L01506
genome : 2,959,415 - 2,980,545 (21,131)
query : 1 - 2,325 (2,325/2,327)
6 exons
identity = 0.991
5'(1.000;1.000;1.000;1.000;1.000;0.987)3'
coverage = 0.999
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
L01507
genome : 2,959,417 - 2,980,545 (21,129)
query : 1 - 2,401 (2,401/2,407)
6 exons
identity = 0.992
5'(1.000;1.000;1.000;1.000;1.000;0.987)3'
coverage = 0.998
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
S97398
genome : 2,959,418 - 2,962,329 (2,912)
query : 1 - 374 (374/378)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.989
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
BC061564
genome : 2,959,446 - 2,980,543 (21,098)
query : 5 - 2,375 (2,371/2,405)
6 exons
identity = 0.999
5'(0.995;1.000;1.000;1.000;1.000;0.999)3'
coverage = 0.997
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
X12658
Representative transcript
genome : 2,959,455 - 2,979,704 (20,250)
query : 10 - 1,436 (1,427/1,439)
7 exons
identity = 0.985
5'(1.000;1.000;1.000;0.994;1.000;0.987;0.956)3'
coverage = 0.992
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000100419
Pongo
sp. (Orangutan) : ENSPPYT00000015856
Macaca
sp. (Macaque) : U53566
Mus
sp. (Mouse) : D12885
Canis
sp. (Dog) : AF035585
Equus
sp. (Horse) : ENSECAT00000009615
Bos
sp. (Cow) : ENSBTAT00000012033
Monodelphis
sp. (Opossum) : ENSMODT00000021503
Gallus
sp. (Chicken) : AJ236855
Danio
sp. (Zebrafish) : AY421970
Oryzias
sp. (Medaka) : ENSORLT00000019875
Tetraodon
sp. (Tetraodon) : GSTENT00030440001
Takifugu
sp. (Fugu) : SINFRUT00000145645
ENSRNOT00000044300
genome : 2,959,453 - 2,979,621 (20,169)
query : 1 - 1,329 (1,329/1,329)
7 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.980)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
M23253
genome : 2,959,473 - 2,979,822 (20,350)
query : 5 - 1,548 (1,544/1,548)
6 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;0.994)3'
coverage = 0.997
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
X63089
genome : 2,962,179 - 2,962,256 (78)
query : 1 - 78 (78/78)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
XM_343995
Representative transcript
genome : 2,983,223 - 3,090,399 (107,177)
query : 1 - 2,712 (2,712/2,712)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000004639
Pan
sp. (Chimpanzee) : XR_019694
Pongo
sp. (Orangutan) : CR858910
Macaca
sp. (Macaque) : XM_001104518
Mus
sp. (Mouse) : BC055809
Canis
sp. (Dog) : XM_544799
Equus
sp. (Horse) : XM_001499808
Bos
sp. (Cow) : BC104514
Monodelphis
sp. (Opossum) : XM_001379805
Gallus
sp. (Chicken) : AJ851748
Danio
sp. (Zebrafish) : BC067142
Danio
sp. (Zebrafish) : NM_001123297
Oryzias
sp. (Medaka) : ENSORLT00000019887
Tetraodon
sp. (Tetraodon) : CR722600
Takifugu
sp. (Fugu) : SINFRUT00000145644
ENSRNOT00000000904
genome : 2,983,241 - 3,025,923 (42,683)
query : 1 - 2,127 (2,127/2,127)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XR_005587
Representative transcript
genome : 3,114,558 - 3,116,842 (2,285)
query : 1 - 2,234 (2,234/2,234)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XR_008135
genome : 3,114,558 - 3,116,842 (2,285)
query : 1 - 2,234 (2,234/2,234)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSRNOT00000000903
genome : 3,115,601 - 3,116,893 (1,293)
query : 8 - 1,293 (1,286/1,293)
1 exon
identity = 0.995
3'(0.995)5'
coverage = 0.995
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
AABR03079438.1
2956811-2963686 W +
50
2963687-2963736 N
AABR03080518.1
2963737-2971927 W +
50
2971928-2971977 N
AABR03079628.1
2971978-2990518 W +
20991
2990519-3011509 N
AABR03081395.1
3011510-3014948 W +
2777
3014949-3017725 N
AABR03081461.1
3017726-3020848 W +
177
3020849-3021025 N
AABR03080006.1
3021026-3034417 W +
50
3034418-3034467 N
AABR03080521.1
3034468-3042656 W +
553
3042657-3043209 N
AABR03079834.1
3043210-3058679 W +
50
3058680-3058729 N
AABR03079360.1
3058730-3081896 W +
1719
3081897-3083615 N
AABR03081713.1
3083616-3085830 W +
50
3085831-3085880 N
AABR03078850.1
3085881-3116810 W +