bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
R.norvegicus
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_001073722
Representative transcript
genome : 11,311,067 - 11,323,564 (12,498)
query : 1 - 2,940 (2,940/2,940)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;0.995;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000069515
Pan
sp. (Chimpanzee) : XM_512222
Pongo
sp. (Orangutan) : ENSPPYT00000010846
Macaca
sp. (Macaque) : XM_001117192
Mus
sp. (Mouse) : AK149345
Canis
sp. (Dog) : XM_849586
Equus
sp. (Horse) : XR_044619
Monodelphis
sp. (Opossum) : ENSMODT00000007233
Gallus
sp. (Chicken) : BX929714
Danio
sp. (Zebrafish) : BC124195
Oryzias
sp. (Medaka) : ENSORLT00000000135
Tetraodon
sp. (Tetraodon) : GSTENT00008288001
Takifugu
sp. (Fugu) : SINFRUT00000129674
ENSRNOT00000015257
genome : 11,311,092 - 11,323,250 (12,159)
query : 1 - 2,598 (2,598/2,598)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001073685
genome : 11,311,457 - 11,323,562 (12,106)
query : 1 - 2,875 (2,875/2,875)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;0.995;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_216837
genome : 11,311,457 - 11,323,562 (12,106)
query : 1 - 2,875 (2,875/2,875)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
NM_001077642
genome : 11,325,539 - 11,327,261 (1,723)
query : 1 - 835 (835/846)
5 exons
identity = 0.999
3'(1.000;0.996;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
S73894
Representative transcript
genome : 11,325,539 - 11,327,261 (1,723)
query : 1 - 835 (835/846)
5 exons
identity = 0.999
3'(1.000;0.996;1.000;1.000;1.000)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000495587
Pan
sp. (Chimpanzee) : XM_512221
Pongo
sp. (Orangutan) : ENSPPYT00000010845
Macaca
sp. (Macaque) : XM_001117186
Mus
sp. (Mouse) : M11768
Canis
sp. (Dog) : XM_542213
Danio
sp. (Zebrafish) : BC095067
Tetraodon
sp. (Tetraodon) : CR651214
Takifugu
sp. (Fugu) : SINFRUT00000157407
M92059
genome : 11,325,547 - 11,327,251 (1,705)
query : 8 - 824 (817/832)
5 exons
identity = 0.999
3'(1.000;0.996;1.000;1.000;1.000)5'
coverage = 0.982
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
ENSRNOT00000015029
genome : 11,325,547 - 11,327,261 (1,715)
query : 1 - 827 (827/827)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSRNOT00000014981
genome : 11,329,644 - 11,331,467 (1,824)
query : 1 - 880 (880/880)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001077083
Representative transcript
genome : 11,329,644 - 11,331,467 (1,824)
query : 1 - 880 (880/880)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000195581
Pan
sp. (Chimpanzee) : XM_001172130
Pongo
sp. (Orangutan) : ENSPPYT00000010844
Macaca
sp. (Macaque) : XM_001117181
Mus
sp. (Mouse) : AK143710
Monodelphis
sp. (Opossum) : ENSMODT00000019029
Gallus
sp. (Chicken) : XM_418216
Danio
sp. (Zebrafish) : XM_001343286
XM_234883
genome : 11,329,644 - 11,331,467 (1,824)
query : 1 - 880 (880/880)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
AABR03057121.1
11318400-11333381 W +
50
11333382-11333431 N
AABR03061705.1
11333432-11334399 W +
(TTATA)n
(GGGGA)n
ID_B1
(CCCCG)n
B1_Mur3
RMER4A
B2_Rat2
ID_B1
L2
MIR
ID_B1
B1_Mur2
(CCA)n
B1_Rn
BC1_Rn
B2_Rn1
B3A
PB1D7
MIRb
(T)n
ID_Rn1
(T)n
B1_Mur4
B2_Rat2
PB1D10
ID_B1
(TG)n
ID_B1
(CA)n
B2_Rn1
(GAA)n