bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
R.norvegicus
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSRNOT00000028969
genome : 10,959,990 - 10,962,720 (2,731)
query : 1 - 925 (925/925)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSRNOT00000060722
genome : 10,959,990 - 10,962,720 (2,731)
query : 1 - 979 (979/979)
6 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;0.976;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
J03588
Representative transcript
genome : 10,959,990 - 10,962,720 (2,731)
query : 1 - 924 (924/924)
6 exons
identity = 0.998
5'(1.000;1.000;0.984;1.000;1.000;0.997)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000302135
Pan
sp. (Chimpanzee) : XM_001172605
Pongo
sp. (Orangutan) : ENSPPYT00000010868
Macaca
sp. (Macaque) : XM_001117362
Mus
sp. (Mouse) : AK140688
Canis
sp. (Dog) : XM_542203
Equus
sp. (Horse) : ENSECAT00000009900
Bos
sp. (Cow) : BC109825
Monodelphis
sp. (Opossum) : ENSMODT00000033775
Gallus
sp. (Chicken) : XM_001234062
Danio
sp. (Zebrafish) : BC107607
Oryzias
sp. (Medaka) : ENSORLT00000010343
Tetraodon
sp. (Tetraodon) : CR727851
Takifugu
sp. (Fugu) : SINFRUT00000157734
NM_012793
genome : 10,959,990 - 10,962,720 (2,731)
query : 1 - 924 (924/924)
6 exons
identity = 0.998
5'(1.000;1.000;0.984;1.000;1.000;0.997)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
BC086574
Representative transcript
genome : 10,963,916 - 10,971,188 (7,273)
query : 1 - 723 (723/750)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000330518
Pan
sp. (Chimpanzee) : ENSPTRT00000018721
Pongo
sp. (Orangutan) : CR861249
Macaca
sp. (Macaque) : XM_001117356
Mus
sp. (Mouse) : AK003132
Canis
sp. (Dog) : XM_533960
Equus
sp. (Horse) : XM_001503789
Bos
sp. (Cow) : BC109716
Monodelphis
sp. (Opossum) : XM_001373213
Gallus
sp. (Chicken) : XM_001234053
Danio
sp. (Zebrafish) : BC056291
Oryzias
sp. (Medaka) : ENSORLT00000010328
Tetraodon
sp. (Tetraodon) : CR661219
Takifugu
sp. (Fugu) : SINFRUT00000157736
NM_001008525
genome : 10,963,916 - 10,971,188 (7,273)
query : 1 - 723 (723/750)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSRNOT00000039728
genome : 10,963,975 - 10,968,256 (4,282)
query : 1 - 642 (642/642)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSRNOT00000060716
genome : 10,963,975 - 10,968,256 (4,282)
query : 1 - 660 (660/660)
8 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.985;
1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
AABR03055762.1
10959552-10975551 W +
GC_rich
RSINE1
PB1D9
PB1D9
BC1_Rn
B1_Mur3
RSINE1
ID_Rn2
MLT1B
PB1D10
B4A
PB1D9
PB1
B1F1
PB1D10
ID_B1
tRNA-Asn-AAC
tRNA-Phe-TTY
B3
B4A
(ATG)n
RSINE1
(CA)n
(TG)n
PB1D7
B1_Mur4
RSINE1
(CA)n
GA-rich
BC1_Rn