bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
R.norvegicus
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
BC079294
Representative transcript
genome : 180,438,070 - 180,441,660 (3,591)
query : 1 - 1,571 (1,571/1,598)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000087663
Pan
sp. (Chimpanzee) : XM_513881
Pongo
sp. (Orangutan) : ENSPPYT00000000867
Macaca
sp. (Macaque) : XM_001113738
Mus
sp. (Mouse) : AK160793
Canis
sp. (Dog) : ENSCAFT00000026647
Equus
sp. (Horse) : XM_001495102
Bos
sp. (Cow) : BC119876
Monodelphis
sp. (Opossum) : XM_001374737
Gallus
sp. (Chicken) : XM_424180
Oryzias
sp. (Medaka) : ENSORLT00000002006
Tetraodon
sp. (Tetraodon) : CR703229
NM_001004226
genome : 180,438,070 - 180,441,660 (3,591)
query : 1 - 1,571 (1,571/1,598)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSRNOT00000026153
genome : 180,438,070 - 180,441,660 (3,591)
query : 1 - 1,571 (1,571/1,571)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
BC101913
Representative transcript
genome : 180,442,064 - 180,446,842 (4,779)
query : 1 - 2,062 (2,062/2,082)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000270998
Pan
sp. (Chimpanzee) : ENSPTRT00000002674
Pongo
sp. (Orangutan) : ENSPPYT00000000868
Macaca
sp. (Macaque) : ENSMMUT00000000136
Mus
sp. (Mouse) : AK009760
Canis
sp. (Dog) : XM_849873
Equus
sp. (Horse) : ENSECAT00000001162
Bos
sp. (Cow) : BT020827
Monodelphis
sp. (Opossum) : XM_001374724
Tetraodon
sp. (Tetraodon) : CR690050
Tetraodon
sp. (Tetraodon) : GSTENT00019328001
Takifugu
sp. (Fugu) : SINFRUT00000182723
NM_001033896
genome : 180,442,064 - 180,446,842 (4,779)
query : 1 - 2,062 (2,062/2,082)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSRNOT00000026414
genome : 180,442,064 - 180,446,842 (4,779)
query : 1 - 2,062 (2,062/2,062)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001059906
Representative transcript
genome : 180,448,768 - 180,475,897 (27,130)
query : 11 - 4,448 (4,438/4,448)
22 exons
identity = 1.000
5'(1.000)3'
coverage = 0.998
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000000806
Pan
sp. (Chimpanzee) : ENSPTRT00000049017
Pongo
sp. (Orangutan) : ENSPPYT00000000869
Macaca
sp. (Macaque) : ENSMMUT00000000134
Mus
sp. (Mouse) : AK129286
Canis
sp. (Dog) : XM_547535
Equus
sp. (Horse) : XM_001500077
Bos
sp. (Cow) : BC134680
Monodelphis
sp. (Opossum) : XM_001374691
Gallus
sp. (Chicken) : XM_423228
Danio
sp. (Zebrafish) : BC096955
Oryzias
sp. (Medaka) : ENSORLT00000020331
Tetraodon
sp. (Tetraodon) : GSTENT00019522001
Takifugu
sp. (Fugu) : SINFRUT00000127468
XM_001073887
genome : 180,448,768 - 180,475,897 (27,130)
query : 11 - 4,448 (4,438/4,448)
22 exons
identity = 1.000
5'(0.996)3'
coverage = 0.998
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSRNOT00000026514
genome : 180,448,929 - 180,474,674 (25,746)
query : 1 - 3,054 (3,054/3,054)
22 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
AABR03012198.1
180436453-180452452 W +
B3
MurSatRep1
(TG)n
RSINE1
ID_B1
AT_rich
B2_Rn1
PB1D7
RSINE1
ID_Rn1
B3
B3A
B1_Mur1
MT2B
B3
ID4
ID4_
B1F
L3b
PB1D7
ID_Rn1
B1_Mur2
(CA)n
B1_Mur2
L2
L2
RSINE1
Lx8
B3
AT_rich
RSINE1
PB1D9
(CGG)n
MIR3
B3
ID_Rn2
AT_rich
(TG)n
(TG)n
B1_Rn
B2_Rn
B2_Rat1
MIR