bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSPTRT00000013436
genome : 872,755 - 917,783 (45,029)
query : 1 - 1,458 (1,458/1,458)
7 exons
identity = 0.998
5'(0.973;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000018678
genome : 872,755 - 917,770 (45,016)
query : 1 - 1,449 (1,449/1,449)
7 exons
identity = 0.995
5'(0.973;1.000;1.000;1.000;0.961;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_524501
Representative transcript
genome : 890,234 - 918,529 (28,296)
query : 1 - 2,915 (2,915/2,915)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000222066
Pongo
sp. (Orangutan) : ENSPPYT00000010849
Macaca
sp. (Macaque) : XM_001092793
Mus
sp. (Mouse) : AK154956
Rattus
sp. (Rat) : ENSRNOT00000026708
Canis
sp. (Dog) : XM_850100
Bos
sp. (Cow) : XM_588589
Monodelphis
sp. (Opossum) : XM_001374588
Gallus
sp. (Chicken) : ENSGALT00000009379
Danio
sp. (Zebrafish) : XM_686173
Oryzias
sp. (Medaka) : ENSORLT00000010297
Tetraodon
sp. (Tetraodon) : GSTENT00012850001
Takifugu
sp. (Fugu) : SINFRUT00000157746
HIT000222066
(
U88047
)
genome : 872,555 - 918,526 (45,972)
query : 1 - 2,725 (2,725/2,725)
8 exons
identity = 0.931
5'(0.603;0.695;0.995;0.988;0.997;0.990;0.972)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000087511
(
BC010544
)
genome : 923,179 - 924,661 (1,483)
query : 1 - 1,333 (1,333/1,348)
2 exons
identity = 0.933
5'(0.982;0.916)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig654.27
884381-887665 W -
76
887666-887741 N
Contig654.26
887742-891858 W -
296
891859-892154 N
Contig654.25
892155-893789 W -
30
893790-893819 N
Contig654.24
893820-899890 W -
88
899891-899978 N
Contig654.23
899979-903034 W -
1367
903035-904401 N
Contig654.22
904402-905427 W -
10
905428-905437 N
Contig654.21
905438-906917 W -
437
906918-907354 N
Contig654.20
907355-918574 W -
728
918575-919302 N
Contig654.19
919303-920629 W -
10
920630-920639 N
Contig654.18
920640-923515 W -
189
923516-923704 N
Contig654.17
923705-924380 W -