bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_512222
Representative transcript
genome : 812,712 - 834,741 (22,030)
query : 1 - 2,239 (2,239/2,239)
14 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000069515
Pongo
sp. (Orangutan) : ENSPPYT00000010846
Macaca
sp. (Macaque) : XM_001117192
Mus
sp. (Mouse) : AK149345
Rattus
sp. (Rat) : XM_001073722
Canis
sp. (Dog) : XM_849586
Equus
sp. (Horse) : XR_044619
Monodelphis
sp. (Opossum) : ENSMODT00000007233
Gallus
sp. (Chicken) : BX929714
Danio
sp. (Zebrafish) : BC124195
Oryzias
sp. (Medaka) : ENSORLT00000000135
Tetraodon
sp. (Tetraodon) : GSTENT00008288001
Takifugu
sp. (Fugu) : SINFRUT00000129674
ENSPTRT00000050042
genome : 812,712 - 832,711 (20,000)
query : 1 - 1,752 (1,752/1,752)
10 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172153
Representative transcript
genome : 838,055 - 855,763 (17,709)
query : 17 - 1,974 (1,958/1,974)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.992
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000293667
Pongo
sp. (Orangutan) : ENSPPYT00000010847
Macaca
sp. (Macaque) : XM_001092673
Mus
sp. (Mouse) : AK088107
Rattus
sp. (Rat) : XM_001077056
Canis
sp. (Dog) : XM_850107
Monodelphis
sp. (Opossum) : XM_001374788
Gallus
sp. (Chicken) : CR406026
Danio
sp. (Zebrafish) : BC122150
Oryzias
sp. (Medaka) : ENSORLT00000010274
Tetraodon
sp. (Tetraodon) : GSTENT00001022001
Tetraodon
sp. (Tetraodon) : GSTENT00012848001
ENSPTRT00000048002
genome : 838,089 - 855,463 (17,375)
query : 1 - 1,786 (1,786/1,786)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XR_020820
Representative transcript
genome : 859,240 - 863,548 (4,309)
query : 1 - 1,626 (1,626/1,626)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000435167
Pongo
sp. (Orangutan) : ENSPPYT00000010848
Mus
sp. (Mouse) : AK039628
Rattus
sp. (Rat) : AB051066
Canis
sp. (Dog) : XM_850105
Monodelphis
sp. (Opossum) : XM_001374715
Danio
sp. (Zebrafish) : EU047917
Danio
sp. (Zebrafish) : EU047918
Oryzias
sp. (Medaka) : ENSORLT00000002103
Tetraodon
sp. (Tetraodon) : GSTENT00026514001
Takifugu
sp. (Fugu) : SINFRUT00000131919
ENSPTRT00000018673
genome : 859,255 - 863,552 (4,298)
query : 1 - 1,603 (1,603/1,603)
6 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.978;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000007896
(
AK024622
)
genome : 838,060 - 838,470 (411)
query : 1 - 411 (411/473)
1 exon
identity = 0.973
3'(0.973)5'
coverage = 0.998
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000002738
(
AK000263
)
genome : 838,060 - 838,520 (461)
query : 1 - 461 (461/504)
1 exon
identity = 0.980
3'(0.980)5'
coverage = 0.998
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000293667
(
CR614472
)
genome : 838,089 - 855,463 (17,375)
query : 1 - 1,786 (1,786/1,786)
8 exons
identity = 0.993
3'(0.991;1.000;1.000;1.000;1.000;0.984;1.000;
0.993)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000251234
(
AY253982
)
genome : 859,255 - 863,552 (4,298)
query : 1 - 1,607 (1,607/1,607)
5 exons
identity = 0.970
5'(0.990;1.000;0.993;0.865;0.982)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig654.40
826909-831916 W -
260
831917-832176 N
Contig654.39
832177-835988 W -
365
835989-836353 N
Contig654.38
836354-839368 W -
736
839369-840104 N
Contig654.37
840105-842439 W -
630
842440-843069 N
Contig654.36
843070-846145 W -
760
846146-846905 N
Contig654.35
846906-850813 W -
431
850814-851244 N
Contig654.34
851245-854404 W -
813
854405-855217 N
Contig654.33
855218-859671 W -
356
859672-860027 N
Contig654.32
860028-862410 W -
10
862411-862420 N
Contig654.31
862421-865751 W -
720
865752-866471 N
Contig654.30
866472-866908 W -