bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XR_025223
Representative transcript
genome : 1,419,772 - 1,450,681 (30,910)
query : 1 - 10,633 (10,633/10,633)
17 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000058298
Pongo
sp. (Orangutan) : ENSPPYT00000010871
Macaca
sp. (Macaque) : ENSMMUT00000004321
Mus
sp. (Mouse) : AK140637
Rattus
sp. (Rat) : XM_001076585
Canis
sp. (Dog) : XM_542202
Bos
sp. (Cow) : XM_604945
Monodelphis
sp. (Opossum) : ENSMODT00000006426
Danio
sp. (Zebrafish) : ENSDART00000091689
Oryzias
sp. (Medaka) : ENSORLT00000016562
Tetraodon
sp. (Tetraodon) : GSTENT00008284001
Takifugu
sp. (Fugu) : SINFRUT00000129668
ENSPTRT00000018730
genome : 1,427,876 - 1,446,283 (18,408)
query : 1 - 6,081 (6,081/6,081)
15 exons
identity = 0.998
5'(1.000;0.996)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001148449
genome : 1,451,074 - 1,455,413 (4,340)
query : 1 - 808 (808/808)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_512239
genome : 1,451,074 - 1,455,353 (4,280)
query : 1 - 797 (797/797)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001148308
genome : 1,451,074 - 1,455,351 (4,278)
query : 1 - 769 (769/769)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001148242
genome : 1,451,074 - 1,455,288 (4,215)
query : 1 - 940 (940/940)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001148164
Representative transcript
genome : 1,451,143 - 1,455,383 (4,241)
query : 1 - 621 (621/621)
4 exons
identity = 0.990
3'(1.000;0.953;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000082302
Pongo
sp. (Orangutan) : ENSPPYT00000010872
Macaca
sp. (Macaque) : ENSMMUT00000004324
Mus
sp. (Mouse) : BC023429
Rattus
sp. (Rat) : BC079167
Canis
sp. (Dog) : XM_850038
Equus
sp. (Horse) : XM_001914807
Bos
sp. (Cow) : BC116031
Monodelphis
sp. (Opossum) : XM_001373101
Danio
sp. (Zebrafish) : XM_001340230
Takifugu
sp. (Fugu) : SINFRUT00000171249
ENSPTRT00000018732
genome : 1,451,225 - 1,455,382 (4,158)
query : 1 - 547 (547/547)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172660
Representative transcript
genome : 1,458,319 - 1,478,128 (19,810)
query : 1 - 1,779 (1,779/1,779)
12 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000018733
genome : 1,458,319 - 1,470,313 (11,995)
query : 1 - 1,602 (1,602/1,602)
10 exons
identity = 0.996
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000018842
(
AK093985
)
genome : 1,449,243 - 1,455,364 (6,122)
query : 1 - 2,131 (2,131/2,131)
5 exons
identity = 0.973
3'(0.976;0.965;0.945;0.985;1.000)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000012618
(
AK056004
)
genome : 1,450,200 - 1,452,901 (2,702)
query : 1 - 2,314 (2,314/2,314)
2 exons
identity = 0.975
3'(0.990;0.971)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig677.20
1445263-1445356 W -
473
1445357-1445829 N
Contig677.19
1445830-1450681 W -
387
1450682-1451068 N
Contig677.18
1451069-1456182 W -
486
1456183-1456668 N
Contig677.17
1456669-1457510 W -
10
1457511-1457520 N
Contig677.16
1457521-1458996 W -
1653
1458997-1460649 N
Contig677.15
1460650-1461262 W -
GC_rich
GC_rich
AluJb
MER3
AluJo
MER3
L2
AluSx
L2
AluSx
(TTA)n
AluSx
FLAM_A
AluSx
L1MB7
AluSx
AluY
GA-rich
AluSc
GA-rich
AluJo
AluSq/x
AluSx
AluY