bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XR_023774
Representative transcript
genome : 1,022,869 - 1,043,703 (20,835)
query : 1 - 4,952 (4,952/4,952)
24 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000042358
Pongo
sp. (Orangutan) : CR858815
Macaca
sp. (Macaque) : XM_001117237
Mus
sp. (Mouse) : AK159194
Rattus
sp. (Rat) : ENSRNOT00000060648
Canis
sp. (Dog) : XM_850090
Bos
sp. (Cow) : XM_590584
Monodelphis
sp. (Opossum) : ENSMODT00000006975
Gallus
sp. (Chicken) : ENSGALT00000023142
Danio
sp. (Zebrafish) : XM_001919343
Oryzias
sp. (Medaka) : ENSORLT00000019269
Tetraodon
sp. (Tetraodon) : GSTENT00024702001
Takifugu
sp. (Fugu) : SINFRUT00000130410
ENSPTRT00000018693
genome : 1,023,124 - 1,042,972 (19,849)
query : 1 - 3,479 (3,479/3,479)
20 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;0.973;0.995;
1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_512960
Representative transcript
genome : 1,044,462 - 1,062,676 (18,215)
query : 1 - 1,266 (1,266/1,266)
8 exons
identity = 0.981
3'(0.981;1.000;1.000;1.000;1.000;1.000;0.944;
0.979)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000031947
Pongo
sp. (Orangutan) : CR860977
Macaca
sp. (Macaque) : XM_001117242
Mus
sp. (Mouse) : AK145201
Rattus
sp. (Rat) : XM_001076884
Canis
sp. (Dog) : XM_863518
Equus
sp. (Horse) : XM_001496263
Bos
sp. (Cow) : BC111280
Monodelphis
sp. (Opossum) : XM_001365226
Oryzias
sp. (Medaka) : ENSORLT00000019214
Tetraodon
sp. (Tetraodon) : GSTENT00024701001
Takifugu
sp. (Fugu) : SINFRUT00000171480
ENSPTRT00000018697
genome : 1,044,463 - 1,051,889 (7,427)
query : 24 - 1,184 (1,161/1,184)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.981
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000018699
Representative transcript
genome : 1,062,678 - 1,065,642 (2,965)
query : 1 - 915 (915/915)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000384989
Pongo
sp. (Orangutan) : AB121010
Macaca
sp. (Macaque) : AB171941
Mus
sp. (Mouse) : AK145770
Rattus
sp. (Rat) : U37427
Bos
sp. (Cow) : AB017534
Monodelphis
sp. (Opossum) : ENSMODT00000006921
Oryzias
sp. (Medaka) : ENSORLT00000018494
Oryzias
sp. (Medaka) : ENSORLT00000019207
Tetraodon
sp. (Tetraodon) : CR672448
Takifugu
sp. (Fugu) : SINFRUT00000178782
XR_020846
genome : 1,063,326 - 1,065,643 (2,318)
query : 1 - 1,157 (1,157/1,157)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172346
Representative transcript
genome : 1,066,773 - 1,140,287 (73,515)
query : 1 - 3,788 (3,788/3,788)
32 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000000680
Pongo
sp. (Orangutan) : ENSPPYT00000010857
Macaca
sp. (Macaque) : XM_001117251
Mus
sp. (Mouse) : AJ512611
Rattus
sp. (Rat) : XM_234899
Canis
sp. (Dog) : XM_542207
Bos
sp. (Cow) : BC126627
Monodelphis
sp. (Opossum) : XM_001374201
Danio
sp. (Zebrafish) : XM_001342080
Danio
sp. (Zebrafish) : XM_687865
Oryzias
sp. (Medaka) : ENSORLT00000001117
Tetraodon
sp. (Tetraodon) : GSTENT00024704001
Takifugu
sp. (Fugu) : SINFRUT00000160104
ENSPTRT00000018703
genome : 1,068,093 - 1,114,875 (46,783)
query : 1 - 3,565 (3,565/3,597)
30 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.991
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000018702
genome : 1,068,093 - 1,092,849 (24,757)
query : 1 - 3,547 (3,547/3,579)
29 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.991
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001147214
Representative transcript
genome : 1,068,904 - 1,069,704 (801)
query : 1 - 571 (571/571)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000031947
(
BC004441
)
genome : 1,044,473 - 1,051,889 (7,417)
query : 75 - 1,224 (1,150/1,248)
7 exons
identity = 0.984
3'(0.971;1.000;1.000;0.966;1.000;1.000;1.000)5'
coverage = 0.940
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000042686
(
AK122813
)
genome : 1,044,474 - 1,053,090 (8,617)
query : 91 - 2,440 (2,350/2,440)
7 exons
identity = 0.978
3'(0.971;1.000;1.000;0.966;1.000;1.000;0.975)5'
coverage = 0.963
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000095920
(
BC039849
)
genome : 1,062,680 - 1,065,635 (2,956)
query : 3 - 908 (906/1,016)
7 exons
identity = 0.989
5'(0.979;1.000;1.000;0.993;1.000;1.000;0.979)3'
coverage = 0.997
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig677.104
1033569-1034017 W -
1089
1034018-1035106 N
Contig677.103
1035107-1037353 W -
1308
1037354-1038661 N
Contig677.102
1038662-1041224 W -
571
1041225-1041795 N
Contig677.101
1041796-1045334 W -
10
1045335-1045344 N
Contig677.100
1045345-1053090 W -
458
1053091-1053548 N
Contig677.99
1053549-1055080 W -
199
1055081-1055279 N
Contig677.98
1055280-1058780 W -
508
1058781-1059288 N
Contig677.97
1059289-1067107 W -
980
1067108-1068087 N
Contig677.96
1068088-1073568 W -