bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSPTRT00000014041
Representative transcript
genome : 1,935,649 - 2,009,312 (73,664)
query : 1 - 959 (959/959)
8 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000031045
Pongo
sp. (Orangutan) : ENSPPYT00000008214
Macaca
sp. (Macaque) : AB169264
Mus
sp. (Mouse) : AK147022
Rattus
sp. (Rat) : BC097301
Canis
sp. (Dog) : XM_537013
Equus
sp. (Horse) : XM_001497839
Bos
sp. (Cow) : BC107545
Monodelphis
sp. (Opossum) : XM_001362945
Danio
sp. (Zebrafish) : BC066607
Oryzias
sp. (Medaka) : ENSORLT00000011557
Takifugu
sp. (Fugu) : SINFRUT00000167314
XM_001145533
genome : 2,006,558 - 2,013,181 (6,624)
query : 1 - 2,461 (2,461/2,461)
3 exons
identity = 0.998
3'(1.000;1.000;0.957)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001145622
Representative transcript
genome : 2,013,708 - 2,015,672 (1,965)
query : 1 - 1,965 (1,965/1,965)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000025316
Macaca
sp. (Macaque) : ENSMMUT00000001058
Mus
sp. (Mouse) : AK141973
Rattus
sp. (Rat) : BC078950
Canis
sp. (Dog) : XM_547188
Equus
sp. (Horse) : ENSECAT00000004227
Bos
sp. (Cow) : BC113240
Monodelphis
sp. (Opossum) : ENSMODT00000020474
Gallus
sp. (Chicken) : BX931173
Danio
sp. (Zebrafish) : BC095057
Oryzias
sp. (Medaka) : ENSORLT00000011564
Tetraodon
sp. (Tetraodon) : CR710643
Takifugu
sp. (Fugu) : SINFRUT00000182354
ENSPTRT00000060021
genome : 2,013,992 - 2,015,670 (1,679)
query : 1 - 1,679 (1,679/1,679)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000031045
(
BC002627
)
genome : 1,935,646 - 2,013,907 (78,262)
query : 1 - 1,462 (1,462/1,501)
10 exons
identity = 0.975
3'(0.910;0.971)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000019054
(
AK094199
)
genome : 2,013,992 - 2,015,668 (1,677)
query : 1 - 1,682 (1,682/1,684)
1 exon
identity = 0.977
5'(0.977)3'
coverage = 0.999
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig3367.1
2006690-2013269 W +
348
2013270-2013617 N
Contig3367.2
2013618-2017244 W +
25
2017245-2017269 N
Contig947.1
2017270-2019869 W +
290
2019870-2020159 N
Contig947.2
2020160-2022689 W +
MER5B
AluSx
AluJo
AluY
AluJo
AluSg/x
AluSx
AluJb
C-rich
GC_rich
AluY
MER5A
MIR
L1ME4a
AluSq
L1ME4a
L1ME4a
AluY
U6
AluJb
AluSx
AluSx
AluJb
(T)n
(TTTTTG)n
L2
L1ME1
MER1A
L1ME1
MSTA