bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_511205
Representative transcript
genome : 2,322,820 - 2,336,624 (13,805)
query : 1 - 3,240 (3,240/3,240)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.991;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000265795
Pongo
sp. (Orangutan) : ENSPPYT00000008243
Macaca
sp. (Macaque) : XM_001084651
Mus
sp. (Mouse) : BC005634
Canis
sp. (Dog) : ENSCAFT00000030824
Equus
sp. (Horse) : XM_001498135
Bos
sp. (Cow) : XM_594119
Monodelphis
sp. (Opossum) : ENSMODT00000020210
Gallus
sp. (Chicken) : BX935602
Danio
sp. (Zebrafish) : BC097238
Oryzias
sp. (Medaka) : ENSORLT00000011494
Tetraodon
sp. (Tetraodon) : GSTENT00033415001
Takifugu
sp. (Fugu) : SINFRUT00000141173
ENSPTRT00000014096
genome : 2,322,868 - 2,335,793 (12,926)
query : 1 - 2,319 (2,319/2,319)
14 exons
identity = 0.996
5'(1.000;0.987;1.000;0.974;0.976;1.000;1.000;
1.000;0.991;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XR_021883
Representative transcript
genome : 2,336,702 - 2,339,156 (2,455)
query : 1 - 908 (908/908)
7 exons
identity = 0.993
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000261163
Mus
sp. (Mouse) : BC106188
Rattus
sp. (Rat) : BC092202
Canis
sp. (Dog) : XM_547180
Equus
sp. (Horse) : XM_001498689
Bos
sp. (Cow) : BC142236
Monodelphis
sp. (Opossum) : ENSMODT00000020200
Gallus
sp. (Chicken) : EF363798
Takifugu
sp. (Fugu) : SINFRUT00000137415
ENSPTRT00000014097
genome : 2,337,038 - 2,339,156 (2,119)
query : 1 - 816 (816/816)
6 exons
identity = 0.979
5'(1.000;1.000;0.976)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000265795
(
BC080524
)
genome : 2,322,833 - 2,335,963 (13,131)
query : 1 - 2,560 (2,560/2,597)
14 exons
identity = 0.975
5'(1.000;0.987;0.981;0.847;0.944;0.987;0.971;
0.977;0.964;0.982;1.000;1.000;0.984;0.994)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000086076
(
BC001713
)
genome : 2,335,910 - 2,337,134 (1,225)
query : 1 - 1,225 (1,225/1,244)
1 exon
identity = 0.986
3'(0.986)5'
coverage = 0.999
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000022882
(
AK098028
)
genome : 2,336,037 - 2,339,448 (3,412)
query : 1 - 2,162 (2,162/2,162)
6 exons
identity = 0.938
5'(0.955;0.966;0.976)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig578.14
2321722-2322387 W +
160
2322388-2322547 N
Contig578.15
2322548-2324763 W +
704
2324764-2325467 N
Contig578.16
2325468-2332144 W +
296
2332145-2332440 N
Contig578.17
2332441-2334106 W +
248
2334107-2334354 N
Contig578.18
2334355-2337721 W +
FLAM_C
AT_rich
AluY
MIR
MIRb
AluY
MIRb
MIR
AluSx
MIR
FLAM_C
AluSp
AluY
MIRb
AluJo/FRAM
AluSx
AluY
AluSx
AluJo/FLAM
MIR3
GC_rich