bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSPTRT00000014012
genome : 1,536,064 - 1,538,624 (2,561)
query : 1 - 1,422 (1,422/1,422)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_523260
Representative transcript
genome : 1,536,064 - 1,538,624 (2,561)
query : 1 - 1,422 (1,422/1,422)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_510730
Representative transcript
genome : 1,545,174 - 1,562,047 (16,874)
query : 1 - 2,575 (2,575/2,575)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000278311
Pongo
sp. (Orangutan) : ENSPPYT00000008201
Macaca
sp. (Macaque) : XM_001089282
Mus
sp. (Mouse) : AK143827
Rattus
sp. (Rat) : ENSRNOT00000022670
Canis
sp. (Dog) : ENSCAFT00000031090
Canis
sp. (Dog) : XM_862899
Equus
sp. (Horse) : ENSECAT00000019096
Bos
sp. (Cow) : XM_604456
Monodelphis
sp. (Opossum) : ENSMODT00000020560
Gallus
sp. (Chicken) : CR406283
Danio
sp. (Zebrafish) : BC125895
Oryzias
sp. (Medaka) : ENSORLT00000009369
Takifugu
sp. (Fugu) : SINFRUT00000163193
ENSPTRT00000014013
genome : 1,545,213 - 1,562,040 (16,828)
query : 1 - 2,382 (2,382/2,382)
14 exons
identity = 0.998
5'(1.000;0.996;0.981;0.991;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XR_024624
Representative transcript
genome : 1,562,017 - 1,670,209 (108,193)
query : 1 - 5,223 (5,223/5,223)
31 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000051420
Pongo
sp. (Orangutan) : ENSPPYT00000008202
Macaca
sp. (Macaque) : XM_001089057
Mus
sp. (Mouse) : DQ266093
Rattus
sp. (Rat) : ENSRNOT00000022063
Canis
sp. (Dog) : XM_547195
Equus
sp. (Horse) : ENSECAT00000009801
Bos
sp. (Cow) : ENSBTAT00000047406
Monodelphis
sp. (Opossum) : XM_001364644
Gallus
sp. (Chicken) : AJ851629
Oryzias
sp. (Medaka) : ENSORLT00000009307
Tetraodon
sp. (Tetraodon) : GSTENT00024049001
Takifugu
sp. (Fugu) : SINFRUT00000163188
ENSPTRT00000014019
genome : 1,562,018 - 1,665,431 (103,414)
query : 1 - 4,924 (4,924/4,924)
29 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.971;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000060424
Representative transcript
genome : 1,586,563 - 1,595,451 (8,889)
query : 1 - 435 (435/435)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000032095
Pongo
sp. (Orangutan) : ENSPPYT00000008203
Macaca
sp. (Macaque) : XM_001089402
Mus
sp. (Mouse) : AK146008
Rattus
sp. (Rat) : BC087601
Canis
sp. (Dog) : ENSCAFT00000031073
Equus
sp. (Horse) : ENSECAT00000016331
Bos
sp. (Cow) : BC122684
Monodelphis
sp. (Opossum) : ENSMODT00000020555
Gallus
sp. (Chicken) : XM_415054
Danio
sp. (Zebrafish) : BC122129
Oryzias
sp. (Medaka) : ENSORLT00000009311
Tetraodon
sp. (Tetraodon) : GSTENT00024048001
Takifugu
sp. (Fugu) : SINFRUT00000163186
ENSPTRT00000014021
genome : 1,668,303 - 1,670,964 (2,662)
query : 1 - 882 (882/882)
3 exons
identity = 0.995
3'(1.000;0.980;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000014022
genome : 1,672,130 - 1,745,841 (73,712)
query : 1 - 6,825 (6,825/6,825)
26 exons
identity = 0.999
5'(1.000;1.000;0.966;0.969;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XR_025521
Representative transcript
genome : 1,672,130 - 1,737,305 (65,176)
query : 1 - 8,654 (8,654/8,654)
30 exons
identity = 0.998
5'(1.000;1.000;0.966;0.969;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000028705
Pongo
sp. (Orangutan) : ENSPPYT00000008205
Macaca
sp. (Macaque) : XR_014757
Mus
sp. (Mouse) : AK147411
Rattus
sp. (Rat) : ENSRNOT00000022050
Canis
sp. (Dog) : XM_548600
Equus
sp. (Horse) : ENSECAT00000025061
Bos
sp. (Cow) : ENSBTAT00000002854
Monodelphis
sp. (Opossum) : XM_001364785
Gallus
sp. (Chicken) : ENSGALT00000015211
Danio
sp. (Zebrafish) : XM_001338039
Oryzias
sp. (Medaka) : ENSORLT00000014519
Tetraodon
sp. (Tetraodon) : GSTENT00003715001
Takifugu
sp. (Fugu) : SINFRUT00000172550
H.sapiens
(Human) : HIT000501130
Danio
sp. (Zebrafish) : XM_001920856
ENSPTRT00000014023
genome : 1,690,857 - 1,737,305 (46,449)
query : 1 - 6,848 (6,848/6,848)
16 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000365288 (
NM_001013658
)
genome : 1,536,064 - 1,538,624 (2,561)
query : 1 - 1,422 (1,422/1,422)
3 exons
identity = 0.987
3'(0.991;0.985;0.976)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000437592
(
DQ571061
)
genome : 1,546,001 - 1,546,029 (29)
query : 2 - 30 (29/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.967
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000051420
(
BC035577
)
genome : 1,562,017 - 1,665,431 (103,415)
query : 15 - 4,951 (4,937/4,966)
29 exons
identity = 0.988
3'(0.975;1.000;0.994;0.995;0.990;1.000;0.992;
1.000;1.000;0.990;0.995;0.926;1.000;0.992;
0.994;1.000;1.000;1.000;0.989;1.000;0.980;
1.000;1.000;1.000;1.000;0.993;1.000;0.982;
0.961)5'
coverage = 0.997
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000003642
(
AK001168
)
genome : 1,562,016 - 1,571,458 (9,443)
query : 1 - 1,416 (1,416/1,416)
5 exons
identity = 0.985
3'(0.975;1.000;0.994;0.995;0.994)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000011747
(
AK055133
)
genome : 1,562,018 - 1,614,112 (52,095)
query : 6 - 2,597 (2,592/2,597)
13 exons
identity = 0.990
3'(0.974;1.000;0.994;0.995;0.990;1.000;0.992;
1.000;1.000;0.990;0.995;0.985;1.000)5'
coverage = 0.998
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000090115
(
BC020425
)
genome : 1,585,981 - 1,586,513 (533)
query : 1 - 533 (533/548)
1 exon
identity = 0.991
3'(0.991)5'
coverage = 0.973
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000463679
(
DQ597148
)
genome : 1,592,856 - 1,592,885 (30)
query : 1 - 30 (30/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.968
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000340683
(
BC114455
)
genome : 1,607,730 - 1,608,205 (476)
query : 13 - 487 (475/499)
1 exon
identity = 0.992
3'(0.992)5'
coverage = 0.952
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000454444
(
DQ587913
)
genome : 1,612,456 - 1,612,485 (30)
query : 1 - 30 (30/30)
1 exon
identity = 0.967
3'(0.967)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000023295
(
AK098465
)
genome : 1,633,453 - 1,635,003 (1,551)
query : 1 - 1,524 (1,524/1,659)
1 exon
identity = 0.953
5'(0.953)3'
coverage = 0.919
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000459588
(
DQ593057
)
genome : 1,671,621 - 1,671,652 (32)
query : 1 - 32 (32/32)
1 exon
identity = 0.969
5'(0.969)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000028705
(
AL833832
)
genome : 1,690,835 - 1,746,115 (55,281)
query : 1 - 5,304 (5,304/5,326)
20 exons
identity = 0.965
5'(0.991)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000001141
(
AB037847
)
genome : 1,690,857 - 1,737,303 (46,447)
query : 3 - 7,064 (7,062/7,064)
17 exons
identity = 0.975
5'(1.000)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000049299
(
AK130028
)
genome : 1,693,255 - 1,695,875 (2,621)
query : 1 - 2,619 (2,619/2,619)
1 exon
identity = 0.986
5'(0.986)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig594.51
1536113-1543617 W -
799
1543618-1544416 N
Contig594.50
1544417-1547357 W -
1584
1547358-1548941 N
Contig594.49
1548942-1550376 W -
1619
1550377-1551995 N
Contig594.48
1551996-1554047 W -
250
1554048-1554297 N
Contig72486.1
1554298-1555924 W +
1693
1555925-1557617 N
Contig594.47
1557618-1573856 W -
716
1573857-1574572 N
Contig594.46
1574573-1577606 W -
1355
1577607-1578961 N
Contig594.45
1578962-1580158 W -
10
1580159-1580168 N
Contig594.44
1580169-1582260 W -
475
1582261-1582735 N
Contig594.43
1582736-1591924 W -
10
1591925-1591934 N
Contig594.42
1591935-1596394 W -
185
1596395-1596579 N
Contig594.41
1596580-1600890 W -
265
1600891-1601155 N
Contig594.40
1601156-1609052 W -
2079
1609053-1611131 N
Contig594.39
1611132-1632762 W -
10
1632763-1632772 N
Contig594.38
1632773-1634986 W -
10
1634987-1634996 N
Contig594.37
1634997-1635733 W -
1019
1635734-1636752 N
Contig594.36
1636753-1638679 W -
265
1638680-1638944 N
Contig594.35
1638945-1647155 W -
10
1647156-1647165 N
Contig594.34
1647166-1653978 W -
86
1653979-1654064 N
Contig594.33
1654065-1657681 W -
370
1657682-1658051 N
Contig594.32
1658052-1660246 W -
10
1660247-1660256 N
Contig594.31
1660257-1664473 W -
697
1664474-1665170 N
Contig594.30
1665171-1672468 W -
411
1672469-1672879 N
Contig594.29
1672880-1687909 W -
163
1687910-1688072 N
Contig594.28
1688073-1696112 W -