bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_001172683
genome : 56,464,284 - 56,576,929 (112,646)
query : 1 - 5,912 (5,912/5,912)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172697
genome : 56,464,284 - 56,576,929 (112,646)
query : 1 - 5,888 (5,888/5,888)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172720
genome : 56,464,284 - 56,576,929 (112,646)
query : 1 - 5,885 (5,885/5,885)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_510446
genome : 56,464,284 - 56,576,929 (112,646)
query : 1 - 5,861 (5,861/5,861)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172656
genome : 56,464,284 - 56,571,470 (107,187)
query : 1 - 3,919 (3,919/3,919)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172643
genome : 56,464,284 - 56,563,917 (99,634)
query : 1 - 2,939 (2,939/2,939)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172733
Representative transcript
genome : 56,464,296 - 56,576,929 (112,634)
query : 1 - 6,022 (6,022/6,022)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000055906
Pongo
sp. (Orangutan) : CR861381
Macaca
sp. (Macaque) : XM_001098232
Mus
sp. (Mouse) : AF330197
Rattus
sp. (Rat) : XM_001055544
Canis
sp. (Dog) : XM_846628
Equus
sp. (Horse) : XM_001500128
Bos
sp. (Cow) : ENSBTAT00000018858
Monodelphis
sp. (Opossum) : XM_001368075
Gallus
sp. (Chicken) : AF329846
Danio
sp. (Zebrafish) : XM_001922673
Oryzias
sp. (Medaka) : ENSORLT00000010206
Takifugu
sp. (Fugu) : SINFRUT00000142922
XM_001172710
genome : 56,464,747 - 56,576,929 (112,183)
query : 1 - 5,758 (5,758/5,758)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000013144
genome : 56,507,605 - 56,575,959 (68,355)
query : 1 - 4,509 (4,509/4,509)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_510447
Representative transcript
genome : 56,584,359 - 56,606,847 (22,489)
query : 16 - 2,017 (2,002/2,046)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 0.998
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000003878
Pongo
sp. (Orangutan) : ENSPPYT00000007694
Macaca
sp. (Macaque) : AB168913
Mus
sp. (Mouse) : AK076122
Rattus
sp. (Rat) : BC097952
Canis
sp. (Dog) : XM_535499
Equus
sp. (Horse) : ENSECAT00000015911
Bos
sp. (Cow) : BT020648
Monodelphis
sp. (Opossum) : XM_001368002
Gallus
sp. (Chicken) : X62531
Danio
sp. (Zebrafish) : BC066507
Oryzias
sp. (Medaka) : AB030071
Takifugu
sp. (Fugu) : SINFRUT00000142729
ENSPTRT00000013146
genome : 56,584,850 - 56,606,848 (21,999)
query : 1 - 1,512 (1,512/1,512)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_510448
Representative transcript
genome : 56,617,420 - 56,854,206 (236,787)
query : 1 - 5,177 (5,177/5,177)
28 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000335946
Pongo
sp. (Orangutan) : ENSPPYT00000007695
Macaca
sp. (Macaque) : ENSMMUT00000018137
Mus
sp. (Mouse) : BC040786
Rattus
sp. (Rat) : X74815
Canis
sp. (Dog) : XM_535500
Equus
sp. (Horse) : XM_001918155
Bos
sp. (Cow) : XM_601785
Monodelphis
sp. (Opossum) : ENSMODT00000011288
Gallus
sp. (Chicken) : XM_413782
Danio
sp. (Zebrafish) : BC057426
Danio
sp. (Zebrafish) : XM_677757
Oryzias
sp. (Medaka) : ENSORLT00000010167
Tetraodon
sp. (Tetraodon) : GSTENT00017726001
Takifugu
sp. (Fugu) : SINFRUT00000167315
Takifugu
sp. (Fugu) : SINFRUT00000183146
XM_001172829
genome : 56,617,452 - 56,854,206 (236,755)
query : 1 - 4,372 (4,372/4,372)
28 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172863
genome : 56,617,452 - 56,854,206 (236,755)
query : 1 - 4,806 (4,806/4,806)
28 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172878
genome : 56,617,452 - 56,854,206 (236,755)
query : 1 - 5,046 (5,046/5,046)
27 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172887
genome : 56,617,452 - 56,854,206 (236,755)
query : 1 - 5,172 (5,172/5,172)
28 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172872
genome : 56,617,452 - 56,754,324 (136,873)
query : 1 - 5,356 (5,356/5,356)
27 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000013148
genome : 56,617,580 - 56,854,137 (236,558)
query : 1 - 4,948 (4,948/4,948)
28 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000058453
Representative transcript
genome : 56,627,379 - 56,627,603 (225)
query : 1 - 150 (150/150)
2 exons
identity = 0.987
5'(0.984;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172816
genome : 56,640,346 - 56,854,206 (213,861)
query : 1 - 3,454 (3,454/3,454)
24 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001173003
Representative transcript
genome : 56,686,918 - 56,688,695 (1,778)
query : 1 - 1,778 (1,778/1,778)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000255926
Pongo
sp. (Orangutan) : ENSPPYT00000007697
Macaca
sp. (Macaque) : AB168645
Tetraodon
sp. (Tetraodon) : CR685436
Takifugu
sp. (Fugu) : SINFRUT00000154353
ENSPTRT00000013149
genome : 56,686,922 - 56,688,604 (1,683)
query : 1 - 1,683 (1,683/1,683)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172955
genome : 56,854,261 - 57,011,598 (157,338)
query : 1 - 3,679 (3,679/3,679)
10 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XR_025252
Representative transcript
genome : 56,885,062 - 56,886,110 (1,049)
query : 1 - 1,049 (1,049/1,049)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_510450
genome : 56,924,388 - 57,011,598 (87,211)
query : 1 - 3,609 (3,609/3,609)
9 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000013151
genome : 56,924,388 - 57,010,896 (86,509)
query : 1 - 2,907 (2,907/2,907)
9 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172979
Representative transcript
genome : 56,924,416 - 57,011,598 (87,183)
query : 1 - 3,791 (3,791/3,791)
11 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000039613
Pongo
sp. (Orangutan) : ENSPPYT00000007698
Macaca
sp. (Macaque) : XM_001099348
Mus
sp. (Mouse) : AK044090
Rattus
sp. (Rat) : XM_236376
Canis
sp. (Dog) : XM_535501
Equus
sp. (Horse) : ENSECAT00000013172
Bos
sp. (Cow) : XM_618607
Monodelphis
sp. (Opossum) : XM_001377488
Gallus
sp. (Chicken) : CR387250
Danio
sp. (Zebrafish) : ENSDART00000050979
XM_001172970
genome : 56,924,420 - 57,011,598 (87,179)
query : 1 - 3,746 (3,746/3,746)
10 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172962
genome : 56,924,439 - 57,011,598 (87,160)
query : 1 - 3,599 (3,599/3,599)
10 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172927
genome : 56,924,446 - 57,011,598 (87,153)
query : 1 - 3,522 (3,522/3,522)
9 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172936
genome : 56,924,679 - 57,011,598 (86,920)
query : 1 - 3,637 (3,637/3,637)
9 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172944
genome : 56,930,229 - 57,011,598 (81,370)
query : 1 - 3,820 (3,820/3,820)
9 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000055906
(
BX647259
)
genome : 56,464,554 - 56,576,589 (112,036)
query : 1 - 5,278 (5,278/5,297)
14 exons
identity = 0.995
5'(0.995;1.000;0.985;0.997;1.000;1.000;1.000;
0.990;0.990;0.996)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000020182
(
AK095327
)
genome : 56,546,464 - 56,575,959 (29,496)
query : 1 - 3,010 (3,010/3,010)
9 exons
identity = 0.997
5'(1.000;0.989;1.000;1.000;1.000;1.000;0.990;
1.000;0.996)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000005659
(
AK022385
)
genome : 56,584,360 - 56,586,078 (1,719)
query : 1 - 1,714 (1,714/1,714)
1 exon
identity = 0.985
5'(0.985)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000003878
(
AK001404
)
genome : 56,584,850 - 56,606,843 (21,994)
query : 1 - 1,507 (1,507/1,507)
9 exons
identity = 0.996
5'(0.994;1.000;0.982;1.000;0.994;1.000;0.993;
0.991;1.000)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000218253
(
U14391
)
genome : 56,617,861 - 56,854,138 (236,278)
query : 1 - 4,666 (4,666/4,666)
28 exons
identity = 0.986
3'(0.972;0.988;0.980;1.000;0.969;0.993;1.000;
0.994;1.000;0.993;1.000;1.000;1.000;1.000;
0.988;1.000;1.000;0.988;0.990;0.992;1.000;
1.000;1.000;1.000;0.989;1.000;1.000;0.960)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000192309
(
L17330
)
genome : 56,627,288 - 56,627,928 (641)
query : 1 - 641 (641/641)
1 exon
identity = 0.943
5'(0.943)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000255926
(
AY642121
)
genome : 56,686,922 - 56,688,610 (1,689)
query : 1 - 1,687 (1,687/1,700)
1 exon
identity = 0.989
5'(0.989)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000014798
(
AK058192
)
genome : 56,686,985 - 56,688,609 (1,625)
query : 1 - 1,621 (1,621/1,621)
1 exon
identity = 0.986
5'(0.986)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000005290
(
AK022016
)
genome : 56,724,377 - 56,726,978 (2,602)
query : 1 - 2,603 (2,603/2,603)
1 exon
identity = 0.980
3'(0.980)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000095982
(
BC040055
)
genome : 56,752,581 - 56,753,001 (421)
query : 1 - 423 (423/437)
1 exon
identity = 0.974
3'(0.974)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000049494
(
AK130223
)
genome : 56,769,393 - 56,770,849 (1,457)
query : 1 - 1,463 (1,463/1,463)
1 exon
identity = 0.975
3'(0.975)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000005666
(
AK022392
)
genome : 56,785,363 - 56,788,854 (3,492)
query : 1 - 3,489 (3,489/3,489)
1 exon
identity = 0.979
5'(0.979)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000050028
(
AK130757
)
genome : 56,808,452 - 56,810,642 (2,191)
query : 2 - 2,207 (2,206/2,207)
1 exon
identity = 0.980
5'(0.980)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000008346
(
AK025072
)
genome : 56,832,022 - 56,834,317 (2,296)
query : 1 - 2,160 (2,160/2,177)
2 exons
identity = 0.988
3'(0.984;0.989)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000479425 (
ENST00000396071
)
genome : 56,885,220 - 56,886,000 (781)
query : 1 - 777 (777/777)
1 exon
identity = 0.985
3'(0.985)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000039613
(
BC022537
)
genome : 56,924,388 - 57,010,897 (86,510)
query : 1 - 2,905 (2,905/2,920)
9 exons
identity = 0.990
5'(0.982)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig8.750
56535813-56539275 W +
10
56539276-56539285 N
Contig8.751
56539286-56545555 W +
254
56545556-56545809 N
Contig8.752
56545810-56578544 W +
489
56578545-56579033 N
Contig8.753
56579034-56588944 W +
10
56588945-56588954 N
Contig8.754
56588955-56591797 W +
10
56591798-56591807 N
Contig8.755
56591808-56593356 W +
609
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