bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_001172231
Representative transcript
genome : 55,876,901 - 56,038,436 (161,536)
query : 1 - 1,834 (1,834/1,834)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000425428
Pongo
sp. (Orangutan) : ENSPPYT00000007688
Macaca
sp. (Macaque) : XM_001095252
Mus
sp. (Mouse) : AK158285
Rattus
sp. (Rat) : BC088160
Canis
sp. (Dog) : XM_535495
Equus
sp. (Horse) : XM_001498203
Monodelphis
sp. (Opossum) : XM_001377628
Gallus
sp. (Chicken) : ENSGALT00000006734
Danio
sp. (Zebrafish) : BC053243
Oryzias
sp. (Medaka) : ENSORLT00000010349
Tetraodon
sp. (Tetraodon) : CR653959
Takifugu
sp. (Fugu) : SINFRUT00000142950
XM_001172241
genome : 55,898,974 - 56,038,436 (139,463)
query : 1 - 1,782 (1,782/1,782)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000013134
genome : 55,899,152 - 56,038,435 (139,284)
query : 1 - 1,603 (1,603/1,603)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000046128
Representative transcript
genome : 56,007,505 - 56,007,711 (207)
query : 1 - 207 (207/207)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172405
Representative transcript
genome : 56,068,331 - 56,219,842 (151,512)
query : 1 - 5,028 (5,028/5,028)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000062032
Pongo
sp. (Orangutan) : CR860542
Macaca
sp. (Macaque) : AB174702
Mus
sp. (Mouse) : BC057346
Rattus
sp. (Rat) : ENSRNOT00000021066
Canis
sp. (Dog) : AY926593
Equus
sp. (Horse) : EU025849
Bos
sp. (Cow) : BC153863
Monodelphis
sp. (Opossum) : ENSMODT00000011088
Gallus
sp. (Chicken) : AJ851442
Danio
sp. (Zebrafish) : BC153306
Danio
sp. (Zebrafish) : ENSDART00000008663
Oryzias
sp. (Medaka) : ENSORLT00000006689
Oryzias
sp. (Medaka) : ENSORLT00000010319
Tetraodon
sp. (Tetraodon) : GSTENT00017721001
Tetraodon
sp. (Tetraodon) : GSTENT00025611001
Takifugu
sp. (Fugu) : SINFRUT00000129423
Takifugu
sp. (Fugu) : SINFRUT00000142943
XM_001172393
genome : 56,068,331 - 56,219,703 (151,373)
query : 1 - 4,762 (4,762/4,762)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172381
genome : 56,068,331 - 56,218,524 (150,194)
query : 1 - 4,708 (4,708/4,708)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000013135
genome : 56,069,441 - 56,219,839 (150,399)
query : 1 - 3,915 (3,915/3,915)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172326
genome : 56,084,032 - 56,219,703 (135,672)
query : 1 - 2,172 (2,172/2,172)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000039299
genome : 56,155,580 - 56,156,778 (1,199)
query : 1 - 1,199 (1,199/1,199)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001172428
Representative transcript
genome : 56,155,585 - 56,156,798 (1,214)
query : 1 - 1,214 (1,214/1,214)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000321246
(
X07228
)
genome : 55,899,152 - 56,038,435 (139,284)
query : 1 - 1,603 (1,603/1,603)
9 exons
identity = 0.992
5'(0.993;1.000;0.984;0.992;0.991;0.996;0.983;
0.991;0.994)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000016784
(
AK091917
)
genome : 55,902,075 - 55,966,641 (64,567)
query : 18 - 2,246 (2,229/2,246)
3 exons
identity = 0.978
5'(0.977;0.973;0.990)3'
coverage = 0.992
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000093599
(
BC034927
)
genome : 55,989,204 - 55,991,256 (2,053)
query : 1 - 1,756 (1,756/1,773)
2 exons
identity = 0.986
5'(0.988;0.986)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000068265
(
AF090933
)
genome : 56,006,932 - 56,009,340 (2,409)
query : 1 - 1,280 (1,280/1,293)
2 exons
identity = 0.981
3'(0.987;0.959)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000062032
(
AF009615
)
genome : 56,070,008 - 56,219,839 (149,832)
query : 26 - 3,385 (3,360/3,410)
16 exons
identity = 0.994
3'(0.997;1.000;1.000;0.991;1.000;1.000;1.000;
1.000;1.000;1.000;0.993;1.000;1.000;1.000)5'
coverage = 0.985
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000006734
(
AK023460
)
genome : 56,070,295 - 56,094,275 (23,981)
query : 1 - 2,333 (2,333/2,333)
4 exons
identity = 0.993
3'(0.996;1.000;0.991;1.000)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000127479 (
ENST00000331871
)
genome : 56,155,580 - 56,156,778 (1,199)
query : 1 - 1,199 (1,199/1,199)
1 exon
identity = 0.992
5'(0.992)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig8.703
55757668-55815259 W +
807
55815260-55816066 N
Contig8.704
55816067-55820818 W +
272
55820819-55821090 N
Contig8.705
55821091-55826006 W +
280
55826007-55826286 N
Contig8.706
55826287-55829347 W +
10
55829348-55829357 N
Contig8.707
55829358-55842716 W +
460
55842717-55843176 N
Contig8.708
55843177-55846245 W +
1277
55846246-55847522 N
Contig8.709
55847523-55890675 W +
202
55890676-55890877 N
Contig8.710
55890878-55894665 W +
219
55894666-55894884 N
Contig8.711
55894885-55896977 W +
792
55896978-55897769 N
Contig8.712
55897770-55931296 W +
10
55931297-55931306 N
Contig8.713
55931307-55997144 W +
269
55997145-55997413 N
Contig8.714
55997414-56007959 W +
660
56007960-56008619 N
Contig8.715
56008620-56040214 W +
759
56040215-56040973 N
Contig8.716
56040974-56043730 W +
10
56043731-56043740 N
Contig8.717
56043741-56044858 W +
250
56044859-56045108 N
Contig35031.1
56045109-56047488 W +
1360
56047489-56048848 N
Contig8.718
56048849-56051816 W +
637
56051817-56052453 N
Contig8.719
56052454-56066897 W +
354
56066898-56067251 N
Contig8.720
56067252-56116916 W +
965
56116917-56117881 N
Contig8.721
56117882-56157667 W +