bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_522619
Representative transcript
genome : 20,259,891 - 20,265,679 (5,789)
query : 1 - 1,620 (1,620/1,620)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000051657
Pongo
sp. (Orangutan) : ENSPPYT00000006150
Macaca
sp. (Macaque) : XM_001117225
Mus
sp. (Mouse) : AK131917
Rattus
sp. (Rat) : ENSRNOT00000013040
Canis
sp. (Dog) : XM_846742
Bos
sp. (Cow) : XM_866648
Monodelphis
sp. (Opossum) : ENSMODT00000010395
Danio
sp. (Zebrafish) : NM_001020789
Oryzias
sp. (Medaka) : ENSORLT00000016238
Tetraodon
sp. (Tetraodon) : GSTENT00029160001
Takifugu
sp. (Fugu) : SINFRUT00000145710
ENSPTRT00000060316
genome : 20,264,216 - 20,264,533 (318)
query : 1 - 318 (318/318)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_509564
Representative transcript
genome : 20,270,353 - 20,317,858 (47,506)
query : 1 - 2,011 (2,011/2,011)
5 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000038262
Pongo
sp. (Orangutan) : ENSPPYT00000006151
Macaca
sp. (Macaque) : XM_001085919
Mus
sp. (Mouse) : AK012083
Rattus
sp. (Rat) : XM_001063156
Canis
sp. (Dog) : XM_543173
Equus
sp. (Horse) : ENSECAT00000019376
Bos
sp. (Cow) : BC118400
Monodelphis
sp. (Opossum) : XM_001375115
Gallus
sp. (Chicken) : AJ719998
Danio
sp. (Zebrafish) : BC066508
Oryzias
sp. (Medaka) : ENSORLT00000016388
Tetraodon
sp. (Tetraodon) : CR714423
Takifugu
sp. (Fugu) : SINFRUT00000145711
XM_001148298
genome : 20,270,353 - 20,317,822 (47,470)
query : 1 - 2,039 (2,039/2,039)
5 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000084219
(
AY078238
)
genome : 20,245,084 - 20,265,675 (20,592)
query : 1 - 1,861 (1,861/1,873)
2 exons
identity = 0.917
5'(0.959)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000050187
(
AK130916
)
genome : 20,254,580 - 20,256,286 (1,707)
query : 1 - 1,717 (1,717/1,717)
1 exon
identity = 0.979
5'(0.979)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000043837
(
AK123964
)
genome : 20,257,720 - 20,265,674 (7,955)
query : 1 - 1,943 (1,943/1,943)
3 exons
identity = 0.985
5'(0.990;1.000;0.980)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
pHIT000022989
genome : 20,264,192 - 20,264,674 (483)
query : 1 - 483 (483/483)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000012022
(
AK055408
)
genome : 20,264,983 - 20,317,851 (52,869)
query : 1 - 2,067 (2,067/2,067)
6 exons
identity = 0.989
3'(0.986)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig87.378
20254785-20270784 W -
CT-rich
THER1_MD
MER5B
MER5A
AluJb
MER5A
L1M5
MIR3
(CA)n
(CA)n
(CA)n
(CCCA)n
L1MC4a
L2
AluY
MIRb
AluSq
AluSg
AluSq
MLT1I
AluJb
L1MD2