bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_001149110
genome : 158,202,365 - 158,255,948 (53,584)
query : 1 - 1,758 (1,758/1,758)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001149036
genome : 158,202,757 - 158,255,948 (53,192)
query : 1 - 1,601 (1,601/1,601)
8 exons
identity = 0.994
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.929;
1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001149250
genome : 158,202,757 - 158,255,948 (53,192)
query : 1 - 1,616 (1,616/1,616)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000036915
Representative transcript
genome : 158,202,797 - 158,287,460 (84,664)
query : 1 - 2,484 (2,484/2,484)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000030899
Pongo
sp. (Orangutan) : CR859782
Macaca
sp. (Macaque) : AB168676
Mus
sp. (Mouse) : AK032039
Rattus
sp. (Rat) : BC078908
Canis
sp. (Dog) : XM_856569
Equus
sp. (Horse) : ENSECAT00000009374
Bos
sp. (Cow) : BC122622
Monodelphis
sp. (Opossum) : XM_001364982
Gallus
sp. (Chicken) : AJ851505
Danio
sp. (Zebrafish) : BC075905
Oryzias
sp. (Medaka) : ENSORLT00000013308
Tetraodon
sp. (Tetraodon) : GSTENT00033643001
Takifugu
sp. (Fugu) : SINFRUT00000144885
XM_001149189
genome : 158,202,807 - 158,255,948 (53,142)
query : 7 - 1,572 (1,566/1,572)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 0.996
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001148812
genome : 158,202,811 - 158,287,464 (84,654)
query : 1 - 2,480 (2,480/2,480)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_528807
genome : 158,202,844 - 158,255,948 (53,105)
query : 1 - 1,465 (1,465/1,465)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001148747
genome : 158,203,305 - 158,287,464 (84,160)
query : 1 - 2,453 (2,453/2,453)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001151954
Representative transcript
genome : 158,309,299 - 158,311,167 (1,869)
query : 1 - 1,062 (1,062/1,062)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000030899
(
BC002446
)
genome : 158,202,808 - 158,287,463 (84,656)
query : 1 - 2,476 (2,476/2,494)
10 exons
identity = 0.991
5'(0.984;1.000;1.000;1.000;1.000;0.985;0.993;
1.000;0.990;0.989)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000044700
(
AK124827
)
genome : 158,250,366 - 158,255,880 (5,515)
query : 1 - 2,518 (2,518/2,518)
3 exons
identity = 0.982
5'(0.974;0.993;0.997)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000012043
(
AK055429
)
genome : 158,284,558 - 158,287,462 (2,905)
query : 1 - 2,903 (2,903/2,903)
1 exon
identity = 0.986
5'(0.986)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000018703
(
AK093837
)
genome : 158,285,358 - 158,287,462 (2,105)
query : 1 - 2,105 (2,105/2,105)
1 exon
identity = 0.990
5'(0.990)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000450513
(
DQ583982
)
genome : 158,309,339 - 158,309,367 (29)
query : 1 - 29 (29/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.967
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
1653
158165128-158165659 N
Contig262.45
158165660-158167057 W -
608
158167058-158167665 N
Contig262.44
158167666-158170391 W -
1250
158170392-158171641 N
Contig262.43
158171642-158174143 W -
840
158174144-158174983 N
Contig262.42
158174984-158177542 W -
1199
158177543-158178741 N
Contig262.41
158178742-158180987 W -
1341
158180988-158182328 N
Contig262.40
158182329-158185412 W -
497
158185413-158185909 N
Contig262.39
158185910-158186713 W -
30
158186714-158186743 N
Contig262.38
158186744-158195862 W -
546
158195863-158196408 N
Contig262.37
158196409-158209879 W -
702
158209880-158210581 N
Contig262.36
158210582-158217432 W -
1088
158217433-158218520 N
Contig262.35
158218521-158234882 W -
10
158234883-158234892 N
Contig262.34
158234893-158237117 W -
10
158237118-158237127 N
Contig262.33
158237128-158239254 W -
10
158239255-158239264 N
Contig262.32
158239265-158297857 W -
583
158297858-158298440 N
Contig262.31
158298441-158300858 W -
624
158300859-158301482 N
Contig262.30
158301483-158303056 W -
500
158303057-158303556 N
Contig262.29
158303557-158312579 W -
10
158312580-158312589 N
Contig262.28
158312590-158313643 W -
225
158313644-158313868 N
Contig262.27
158313869-158314908 W -
1022
158314909-158315930 N
Contig262.26
158315931-158316959 W -
10
158316960-158316969 N
Contig262.25
158316970-158318475 W -
10
158318476-158318485 N
Contig262.24
158318486-158325127 W -