bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSPTRT00000001278
genome : 46,087,974 - 46,092,012 (4,039)
query : 1 - 2,116 (2,116/2,116)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_513124
Representative transcript
genome : 46,088,576 - 46,093,373 (4,798)
query : 1 - 3,059 (3,059/3,059)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000280633
Pongo
sp. (Orangutan) : CR858946
Mus
sp. (Mouse) : AK016889
Rattus
sp. (Rat) : ENSRNOT00000034805
Canis
sp. (Dog) : XM_532601
Equus
sp. (Horse) : ENSECAT00000024892
Bos
sp. (Cow) : BC118261
Monodelphis
sp. (Opossum) : XM_001375894
Gallus
sp. (Chicken) : CR354328
Danio
sp. (Zebrafish) : XM_001923878
Oryzias
sp. (Medaka) : ENSORLT00000015793
Tetraodon
sp. (Tetraodon) : GSTENT00032678001
Takifugu
sp. (Fugu) : SINFRUT00000133894
XM_001156172
Representative transcript
genome : 46,091,793 - 46,247,170 (155,378)
query : 1 - 3,488 (3,488/3,488)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000059785
Pongo
sp. (Orangutan) : ENSPPYT00000001694
Macaca
sp. (Macaque) : XM_001101833
Mus
sp. (Mouse) : AK053368
Rattus
sp. (Rat) : BC081737
Canis
sp. (Dog) : XM_845459
Equus
sp. (Horse) : ENSECAT00000018775
Bos
sp. (Cow) : XM_590674
Monodelphis
sp. (Opossum) : XM_001375884
Gallus
sp. (Chicken) : CR387430
Danio
sp. (Zebrafish) : BC128846
Tetraodon
sp. (Tetraodon) : GSTENT00007973001
Tetraodon
sp. (Tetraodon) : GSTENT00026340001
Takifugu
sp. (Fugu) : SINFRUT00000137709
XM_524566
genome : 46,091,793 - 46,247,170 (155,378)
query : 1 - 3,401 (3,401/3,401)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000001280
genome : 46,092,193 - 46,247,159 (154,967)
query : 1 - 3,077 (3,077/3,077)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000043772
genome : 46,092,193 - 46,247,131 (154,939)
query : 1 - 2,962 (2,962/2,962)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000001282
genome : 46,092,194 - 46,247,148 (154,955)
query : 1 - 3,017 (3,017/3,017)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.992;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000007285
(
AK024011
)
genome : 46,088,453 - 46,092,247 (3,795)
query : 1 - 1,872 (1,872/1,872)
8 exons
identity = 0.993
5'(0.993;1.000;0.990;1.000;0.992;1.000;0.991)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000280633
(
CR601438
)
genome : 46,088,494 - 46,092,253 (3,760)
query : 1 - 1,837 (1,837/1,837)
8 exons
identity = 0.993
5'(0.993;1.000;0.990;1.000;1.000;1.000;0.991)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000018187
(
AK093320
)
genome : 46,088,525 - 46,092,275 (3,751)
query : 1 - 2,173 (2,173/2,173)
8 exons
identity = 0.993
5'(0.993;1.000;0.990;1.000;0.996;1.000;0.990)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000059785
(
AB057597
)
genome : 46,092,194 - 46,247,152 (154,959)
query : 4 - 3,064 (3,061/3,071)
11 exons
identity = 0.990
3'(0.992;0.992;1.000;1.000;1.000;1.000;1.000;
0.980;0.984;0.994;0.965)5'
coverage = 0.997
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000010845
(
AK027573
)
genome : 46,092,193 - 46,247,131 (154,939)
query : 3 - 3,050 (3,048/3,050)
11 exons
identity = 0.995
3'(0.995;0.992;1.000;1.000;1.000;1.000;1.000;
0.980;0.984;0.994;0.997)5'
coverage = 0.999
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig265.145
46089481-46119918 W -
10
46119919-46119928 N
Contig265.144
46119929-46128423 W -
456
46128424-46128879 N
Contig265.143
46128880-46140099 W -
572
46140100-46140671 N
Contig265.142
46140672-46144558 W -
10
46144559-46144568 N
Contig265.141
46144569-46168628 W -
488
46168629-46169116 N
Contig265.140
46169117-46181337 W -
368
46181338-46181705 N
Contig265.139
46181706-46184044 W -
2124
46184045-46186168 N
Contig265.138
46186169-46188650 W -
461
46188651-46189111 N
Contig265.137
46189112-46200616 W -
796
46200617-46201412 N
Contig265.136
46201413-46204603 W -
118
46204604-46204721 N
Contig265.135
46204722-46216274 W -
364
46216275-46216638 N
Contig265.134
46216639-46220047 W -
10
46220048-46220057 N
Contig265.133
46220058-46226178 W -
296
46226179-46226474 N
Contig265.132
46226475-46229372 W -
371
46229373-46229743 N
Contig265.131
46229744-46231786 W -
360
46231787-46232146 N
Contig265.130
46232147-46235674 W -
350
46235675-46236024 N
Contig265.129
46236025-46239995 W -
10
46239996-46240005 N
Contig265.128
46240006-46241112 W -
10
46241113-46241122 N
Contig265.127
46241123-46247193 W -
222
46247194-46247415 N
Contig265.126
46247416-46249480 W -