bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_001155516
Representative transcript
genome : 17,015,057 - 17,051,176 (36,120)
query : 1 - 1,172 (1,172/1,172)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000033484
Pongo
sp. (Orangutan) : ENSPPYT00000002168
Macaca
sp. (Macaque) : AB174579
Macaca
sp. (Macaque) : XR_012868
Mus
sp. (Mouse) : BC051934
Rattus
sp. (Rat) : DQ403001
Canis
sp. (Dog) : DQ403010
Equus
sp. (Horse) : DQ403012
Bos
sp. (Cow) : BC102067
Monodelphis
sp. (Opossum) : XM_001376807
Gallus
sp. (Chicken) : CR353422
Danio
sp. (Zebrafish) : BC142799
Oryzias
sp. (Medaka) : ENSORLT00000000328
Tetraodon
sp. (Tetraodon) : CR661751
Tetraodon
sp. (Tetraodon) : CR676594
Takifugu
sp. (Fugu) : SINFRUT00000130511
XM_001155328
genome : 17,015,057 - 17,051,129 (36,073)
query : 1 - 1,128 (1,128/1,128)
8 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.977;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001155457
genome : 17,015,057 - 17,051,018 (35,962)
query : 13 - 1,026 (1,014/1,026)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.988
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_513112
genome : 17,015,057 - 17,029,635 (14,579)
query : 1 - 1,005 (1,005/1,005)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000000501
genome : 17,015,115 - 17,051,161 (36,047)
query : 1 - 1,099 (1,099/1,099)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000033484
(
BC007840
)
genome : 17,015,109 - 17,051,161 (36,053)
query : 1 - 1,105 (1,105/1,130)
8 exons
identity = 0.995
3'(0.995;0.992;1.000;1.000;1.000;1.000;1.000;
0.987)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig384.17
17013116-17047156 W +
304
17047157-17047460 N
Contig384.18
17047461-17053115 W +