bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_514027
Representative transcript
genome : 158,598,283 - 158,647,394 (49,112)
query : 1 - 5,835 (5,835/5,835)
8 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000000192
Pongo
sp. (Orangutan) : ENSPPYT00000000557
Macaca
sp. (Macaque) : XM_001115532
Mus
sp. (Mouse) : BC023737
Rattus
sp. (Rat) : XM_001068245
Canis
sp. (Dog) : ENSCAFT00000022098
Equus
sp. (Horse) : XM_001916737
Bos
sp. (Cow) : BC118180
Monodelphis
sp. (Opossum) : ENSMODT00000007653
Gallus
sp. (Chicken) : AJ720888
Danio
sp. (Zebrafish) : BC115339
Oryzias
sp. (Medaka) : ENSORLT00000018248
Tetraodon
sp. (Tetraodon) : GSTENT00020514001
Takifugu
sp. (Fugu) : NM_001048041
ENSPTRT00000003122
genome : 158,614,497 - 158,647,382 (32,886)
query : 1 - 5,781 (5,781/5,781)
7 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001156511
Representative transcript
genome : 158,651,786 - 158,668,431 (16,646)
query : 1 - 1,887 (1,887/1,887)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000246809
Pongo
sp. (Orangutan) : ENSPPYT00000000556
Macaca
sp. (Macaque) : ENSMMUT00000008765
Mus
sp. (Mouse) : AK172355
Rattus
sp. (Rat) : BC087678
Canis
sp. (Dog) : XM_547446
Equus
sp. (Horse) : XM_001494447
Bos
sp. (Cow) : BC126733
Monodelphis
sp. (Opossum) : XM_001374022
Gallus
sp. (Chicken) : XM_422270
Danio
sp. (Zebrafish) : NM_001128266
Oryzias
sp. (Medaka) : ENSORLT00000021490
Tetraodon
sp. (Tetraodon) : GSTENT00028834001
Takifugu
sp. (Fugu) : SINFRUT00000143036
XM_001156735
genome : 158,651,786 - 158,666,649 (14,864)
query : 1 - 2,757 (2,757/2,757)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_514028
genome : 158,651,786 - 158,666,649 (14,864)
query : 1 - 2,963 (2,963/2,963)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001156565
genome : 158,652,463 - 158,666,649 (14,187)
query : 1 - 2,145 (2,145/2,145)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000058475
genome : 158,652,491 - 158,653,160 (670)
query : 1 - 339 (339/339)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000003124
genome : 158,652,493 - 158,668,305 (15,813)
query : 1 - 1,054 (1,054/1,054)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000003123
genome : 158,652,495 - 158,666,408 (13,914)
query : 1 - 2,013 (2,013/2,013)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001156909
Representative transcript
genome : 158,660,424 - 158,662,939 (2,516)
query : 1 - 2,516 (2,516/2,516)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001156169
genome : 158,671,177 - 158,804,390 (133,214)
query : 1 - 10,727 (10,727/10,727)
12 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001156274
genome : 158,671,177 - 158,712,632 (41,456)
query : 1 - 10,448 (10,448/10,448)
11 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_514029
genome : 158,671,177 - 158,712,631 (41,455)
query : 1 - 10,510 (10,510/10,510)
12 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000003126
Representative transcript
genome : 158,674,523 - 158,712,599 (38,077)
query : 1 - 6,823 (6,823/6,823)
13 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000558720
Pongo
sp. (Orangutan) : ENSPPYT00000000554
Macaca
sp. (Macaque) : ENSMMUT00000044774
Mus
sp. (Mouse) : DQ084361
Canis
sp. (Dog) : XM_537174
Equus
sp. (Horse) : ENSECAT00000006120
Bos
sp. (Cow) : XM_001253284
Monodelphis
sp. (Opossum) : XM_001365858
Gallus
sp. (Chicken) : CR391707
Danio
sp. (Zebrafish) : XM_001923465
Oryzias
sp. (Medaka) : ENSORLT00000009306
Tetraodon
sp. (Tetraodon) : GSTENT00028837001
Takifugu
sp. (Fugu) : SINFRUT00000176586
ENSPTRT00000058473
genome : 158,678,055 - 158,804,186 (126,132)
query : 1 - 3,645 (3,645/3,645)
12 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000000192
(
AB007944
)
genome : 158,614,497 - 158,647,382 (32,886)
query : 190 - 5,983 (5,794/5,983)
7 exons
identity = 0.989
5'(0.988)3'
coverage = 0.968
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000246812
(
AJ299441
)
genome : 158,652,495 - 158,668,431 (15,937)
query : 1 - 1,180 (1,180/1,184)
6 exons
identity = 0.992
5'(0.983;0.991;1.000;1.000;1.000;0.985)3'
coverage = 0.997
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000009272
(
AK025998
)
genome : 158,652,505 - 158,666,408 (13,904)
query : 1 - 2,000 (2,000/2,016)
6 exons
identity = 0.988
5'(0.986;0.991;1.000;1.000;1.000;0.981)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000049403
(
AK130132
)
genome : 158,656,195 - 158,666,407 (10,213)
query : 1 - 1,439 (1,439/1,439)
4 exons
identity = 0.985
5'(1.000;1.000;1.000;0.980)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000279334
(
CR600139
)
genome : 158,660,424 - 158,662,939 (2,516)
query : 1 - 2,518 (2,518/2,518)
1 exon
identity = 0.987
5'(0.987)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000043308
(
AK123435
)
genome : 158,672,129 - 158,676,199 (4,071)
query : 1 - 3,901 (3,901/4,095)
2 exons
identity = 0.974
3'(0.890;0.988)5'
coverage = 0.953
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000009151
(
AK025877
)
genome : 158,672,487 - 158,674,302 (1,816)
query : 1 - 1,817 (1,817/1,839)
1 exon
identity = 0.983
3'(0.983)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000012894
(
AK056280
)
genome : 158,672,488 - 158,675,182 (2,695)
query : 1 - 2,695 (2,695/2,695)
1 exon
identity = 0.984
3'(0.984)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000195630
(
M35296
)
genome : 158,678,055 - 158,804,390 (126,336)
query : 1 - 3,849 (3,849/3,849)
12 exons
identity = 0.997
3'(0.996)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig13.756
158640108-158647985 W -
10
158647986-158647995 N
Contig13.755
158647996-158649412 W -
10
158649413-158649422 N
Contig13.754
158649423-158650600 W -
813
158650601-158651413 N
Contig13.753
158651414-158680107 W -